Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1311 ATGGTATTTGCTCACGGTGCATCCGGCGGAATCAGCGGCGGTGGCAGGTCAGAATCCATTTCTACAGTTCTATTGAAGGAAGCTATGGCAAGAGTAGAACCTGTAAAATCAGAGCAAGTAATGGAGTCCGATGACGACACCGGTCGTTCGAGTTCCGGTGGGTACTGCGATGTTGAAGGTGAATCAAACGACGGCGTTTTCAGTGACGATTCGGGAAGGAAGAGTTCACAAGTGACGGATGAGGAGCTTATTGAACCGGTTCCACCGGTTCACGTCAAGCTCGAAGAACCGGGTGGAGCGGTGGATGAGGTTGATGGCTGTGCTGGGTTTAATAGGTCATCTTATTCATCGCCAGTCTTCTTTCCGAAGCCGATGGAAGGGTTGCACGAGGTCGGCCCACCGCCGTTCCTCAAGAAGACGTTCGAGATGGTGGAGGACCCGGTGACCGACCCGATTGTGTCCTGGAGTGAAGCTCGTGATAGCTTCATCGTTTGGGATTCCCACGAATTCTCCAAAATTCTTCTCCCTAAGTACTTCAAACACGGGAATTTCTCCAGCTTCATTCGCCAGCTTAACACATACGGATTTCGGAAGGTTGATTCAGATCGATGGGAATTTGCCAACGAAGGATTTCAGGGTGGAAAGAAGCATTTGCTGAAGAACATTAGGAGAAGAAGCAAGTATAATAACAAACTGCAACAAGGAGGAGCATTGACTTCCATGAAACCTGGGTTGGAGGCTGAAGTTGAGGGATTGAAAAAGGATCAGAACATAATGAAAGTGGAAATTCTGAAGCTGAGACAGCAACAAGAGACCACACAGGTTCAACTTGTGAGTGTCCAAGAACGTGTTCGGTCTGCTGAGTTGAAGCAGTGCCAGATGATGTATTTCCTAACCAAAATGGCCAGAAAACCAACTTTGGTTCATCAGTTAATCCAGAAGGTTAAGCAAAAAAGAGAACTCCGCGACGGCGAGATTAGTAAGAGACCCAGATTGCTTGGAACGGATTGCCCTTTGAACTCCCCTAAGGCCATACACACCAGATCTGATGTTGATTATAGGCAAGGTAATTTGACTTCATTGCTATCAGAGCTCAATGGACTCTTGTCCGAAACAGTGAACAATAGCAGAATGCAGCCTGCAGCTCCTTCTCCTCCTCTGAGAGAGGATGCACTGTGCAGTTCAGGATTAAGGACCAATAATAATGCTTCCAGGGCAAGTGCGGCTAATGATGTATCTTCCGCGGCTTGCTGTATGATGTCGGAAAATCTGATGGAAGAGAACTCTGTTGTTGAAGAAGGGCTTGATGTGAATGATTCAAATATCTATCTTGAATTGGAGGATTTGATTAGCAAACCAACTGACTGGGTTGGATCTGCAAGTGGATTGGTGGGGCAAACTGGTTGCAAGAGTGGTGAGCCCTCACTTCACATTCACACAGATGCTGCTGCTGGTGCAATGGCAAATTATAATGAGAAAATTGTATTTAGGCTCTTCAACTTACCGACTTGA 1512 0.4683 MVFAHGASGGISGGGRSESISTVLLKEAMARVEPVKSEQVMESDDDTGRSSSGGYCDVEGESNDGVFSDDSGRKSSQVTDEELIEPVPPVHVKLEEPGGAVDEVDGCAGFNRSSYSSPVFFPKPMEGLHEVGPPPFLKKTFEMVEDPVTDPIVSWSEARDSFIVWDSHEFSKILLPKYFKHGNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNNKLQQGGALTSMKPGLEAEVEGLKKDQNIMKVEILKLRQQQETTQVQLVSVQERVRSAELKQCQMMYFLTKMARKPTLVHQLIQKVKQKRELRDGEISKRPRLLGTDCPLNSPKAIHTRSDVDYRQGNLTSLLSELNGLLSETVNNSRMQPAAPSPPLREDALCSSGLRTNNNASRASAANDVSSAACCMMSENLMEENSVVEEGLDVNDSNIYLELEDLISKPTDWVGSASGLVGQTGCKSGEPSLHIHTDAAAGAMANYNEKIVFRLFNLPT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1311 503 ProSitePatterns HSF-type DNA-binding domain signature. 175 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco13g1311 503 SMART hsfneu3 132 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco13g1311 503 Pfam HSF-type DNA-binding 136 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco13g1311 503 Gene3D - 129 226 IPR036388 -
Acco13g1311 503 MobiDBLite consensus disorder prediction 31 82 - -
Acco13g1311 503 SUPERFAMILY "Winged helix" DNA-binding domain 132 225 IPR036390 -
Acco13g1311 503 MobiDBLite consensus disorder prediction 31 45 - -
Acco13g1311 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 122 370 IPR027725 -
Acco13g1311 503 FunFam Heat shock transcription factor 1 129 226 - -
Acco13g1311 503 PRINTS Heat shock factor (HSF) domain signature 187 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco13g1311 503 PRINTS Heat shock factor (HSF) domain signature 174 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco13g1311 503 PRINTS Heat shock factor (HSF) domain signature 136 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1311 Acco-ChrAcco13 12255512 12257718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1311 122 474 HSF AT2G26150 39.554 1.85e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco13g1311 HSF_DNA-bind 7.7e-32 CL0123