Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1310 ATGCCCCGGAGCAGAACGCCGCCTTCCTGCACCTCCTCCGACTCCGAGCTTCTCCTCCTTCATGGACCGTCCAATGAGTGCAGTCTACCTGGCACCAATGAAAACCATTCCGCTTCTCAAGTGCTGAAAAATCATGATGATGACATCTATAGATTGCGGCAAGAAAGCCAGGAAAAGGAACCTGAGAACTTGCAATTTTCTGGTACTGATCTTATTAATCTCAAGCATCCTGTACCCCATAAGGAAAAACAGGTTCATGAGAGTTCTGATGGTAGGGAGTTTATAATGGGAGTAGAGGAAGATGTAGGTTCTACTGGAAGGCAGGATATGATGATGTGTGAAAGAGAAAGGGTTGAGGCCTTGTCCATGGGGACTAATGGTTTGAATAAGGAACATGAGAAAATAGAAGAGTTAAATCAGATAGTGAAAGGAACTGAAAACCTTATTGGCAATGGCTCAATTCCTTTGAACTTGGCATTAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATGGATTACCCTGTGGATTACGTTGAATTTAGAGGATCCGATAGCAATACATCTGGAGCTGAAAGCAAGTTATATATTGAAGGAGAATTTAGTCAAAATATCTCTGAAGGCTTTGATGCATCTTCAATTGCTAACATTTCAACATCTGAAAAAAAGGAAACCTCTGTACCCGAAATTATCACATCAAGTATAACACATGAGAGACAACACAAAGAAATGGAATTGGTGAAACCACCTTGTGCTGCAATGGTTTCTCTTCCTAATATTGAAGAAGGTGAGCTTGAGAAGGAAGAACATGGTCAAAAGGTTCATCCGGTAACTCACCTTTCTCAAGAAGATGGTATTAATTGTAGTATTGAGCTTGAGAGACTACAAAAGGAAATGGAGCTGGAATTGGTGAAACCTGCTTCTACTGCAGTTGTTTCTCTTCCTTCTACTGAAGAGGGTAAGTTTGAGAAGGAAGAACATGGTCAAAAGGTATGTGAGGCTGTGCACTTTTCTATTGATCAGAGTATGAATAATGAAGAATCAAATTCAAGTGTAACGCTTGAGAAACAAAAAAGGGAAATGAACTTAGTAAAACCAGTTGGTGCTGCAATGGTTTCTCTTCCTAATCCCAAAGAGGGTGAGTTTGAGAAGGAAGAACATGGTCAGAGGGTTGAAGGGTTGAAGGAAGATCAACCGGGTCGGAGGGTTTCTGAAGCAATGCGATTTTCTATAGATCAGGATATGAATAACGAAGCATCAAATTCACATATAAAGCATGATAAACAACTAAAGGAGATGGACTCATCGAAATCGAAATCGGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGAAAGTTTGAGAAGAAAGAACAACTCAGGCAAAAGGTTCCTGAAGCAATGCTCATTTCTGTAGATCAGTGTGTGGATAGTGAAGCATTGATTTTAAAAACAAAGCCTGAAAGACAACAAAATAAAATGGAATTGGCTGAACCTGCCTGTCCAGCAATTGTTTCTCTTCTTGGTATTGAAGAGGATGAGAAGGAAGAAGATAATGGTAGTGATGGTTCCAAACCCACCAAGACATGTGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCACGTAGACCTATCAGGTAGAAAGGTCCCTGAAGCAATGCACTTATCTGTAAATCATGGTATAAATGGCGAAACATTGAATTTTGGCGAATATAGTGAAGAGGTGTCATTCGTGGACATTGATATTATGGAAACTGAACATGTAATACAACATGAAGAAGAGCTACCAGAAAAAATAACTCACGCAAACGGTGCAACATTTTCCAATCATCCAGATAAGGAAGAAGACATTGAAGAGGGAGAACTTTCAGGCGACTTTAGAGTGGATGGGAGTTCAATTGATAGGTCTTCTACAGATTCTTTGATGCTAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTCATTGAAAATATGGTATTTCCTTTTAATATACAGAAAGAAGAGAAAGAAAAAAAATTCAAATCAACTCAAGATGCCTGTAACAGTGCACTAATGGAACCTAGGAAAATTGATAAAAATGGGTTTCGAAATGGAGTTGGCTTTGGAATCTCTCGGGAAATTATTGATTATGGAGATATAGTGGAGCATGATTCTCTGTTGATGACTGGAAAAAGAGAAGACAGTGGAATTAAAGGGGTTGTTGGCTTGCCAGCTACTTTGGCTAACAAAAAAGTTTTGCCCAAAGTTGTCTTGGAAGAAGCCACTGAAGATCATCAAAACCCATCTGCGGTAAAGAAAGCTGGCATCTGTTGTAGGAAAAAGCGTGGTCCTCTTACTGAGGAAAAGAAGGCGAGAAAAAAGGAAAAGAAAAGAAAGCAGCGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAATTGCAGCCTGTACAGAAACCAAAAACTATCAAACATTGCCGCCATTATCTGATGGGAAGATGCCATGAGGGCGACAAGTGCAACTTCTCACATGACGTTGTGCCTCTGACAAAATCAAAGCCGTGCTGTCATTTTGCCCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTCTCCAAGTATCCTTGTAGCAATTTTGCGACTATAGGTTCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAGCCAAGCAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGAAGCCTAAACTATTAGGGTATACAAAATTGAGCAAGCCACCTAACATCAGCAGCAGCAGCACTTCTGAGCAAAAACAAATCTCTGATTCAAAAGGAATTCAACCTCACTTCAATTCAGAAAAAGAGGCGGCGGACACTGTAAAGAAACCACTGACGTTGGTACCTAAAGGAATTAGTTTCATCAATGTTTCAAAATCATCATCTCCAAAACCAGGGATGGTAACTCCAAACAAGGGAAATTCTGTTCAAATCGGGACCTTTACTGACCGAAGTGCATCATCTGGCACAGCTTTAAACCCAATGAATCCTGAGAAAACGCCAGTTGTGGCACCTAAAGGAATTAACTTCCTTTCATTTGGAAAAGGTCGTGTTTCCAGTTCCAAAAGTACTGTCTGCTCCTTTTTGAGTAAGGAAAATGGCATCAGGTTGTCTCACAAAGAAAGTTTAGGTACACCTGAACAAGCATCTCTACAGAAGGATGATTGCACTAAAGTTGGCAGTGGGACAAAACAAAGTGTACTGCAGACTGCTGCGTGCTCAAATGAGATTTTAAAGCAAAATCAATCTGTAGCAGAGAAAATGGATTTGGATTTTCAAGGAAAAGCTTCAATATATCGTTATAGTAATGATGTTCAATCTAGCTCAACCTCTCATCAAGATCACAGTCTTAGCAGATCAGTGCAAGAGGGAGTGAAGACGTATACTCCTCAGACTTCAACTCTCACCTCGTCTTTGCTTCCAACTTCTCCATTTGTTTCAGGTCAATCTTCTGAAGGCCTAGCATCTGGACATCATAAGCACGCATTTAACTCAGCCCAAAGGGCACTGTTATCAACCCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTTCCCTGTTGGTGCATCAGCTTTTAAATTAGAGATGAACAAGGATGTATAG 3681 0.4056 MPRSRTPPSCTSSDSELLLLHGPSNECSLPGTNENHSASQVLKNHDDDIYRLRQESQEKEPENLQFSGTDLINLKHPVPHKEKQVHESSDGREFIMGVEEDVGSTGRQDMMMCERERVEALSMGTNGLNKEHEKIEELNQIVKGTENLIGNGSIPLNLALGENQNGSSEVDLMDYPVDYVEFRGSDSNTSGAESKLYIEGEFSQNISEGFDASSIANISTSEKKETSVPEIITSSITHERQHKEMELVKPPCAAMVSLPNIEEGELEKEEHGQKVHPVTHLSQEDGINCSIELERLQKEMELELVKPASTAVVSLPSTEEGKFEKEEHGQKVCEAVHFSIDQSMNNEESNSSVTLEKQKREMNLVKPVGAAMVSLPNPKEGEFEKEEHGQRVEGLKEDQPGRRVSEAMRFSIDQDMNNEASNSHIKHDKQLKEMDSSKSKSVCAAIVSLPTTKEGKFEKKEQLRQKVPEAMLISVDQCVDSEALILKTKPERQQNKMELAEPACPAIVSLLGIEEDEKEEDNGSDGSKPTKTCVRKSKKRDLGHVDLSGRKVPEAMHLSVNHGINGETLNFGEYSEEVSFVDIDIMETEHVIQHEEELPEKITHANGATFSNHPDKEEDIEEGELSGDFRVDGSSIDRSSTDSLMLEQREHDVQKPKHVIENMVFPFNIQKEEKEKKFKSTQDACNSALMEPRKIDKNGFRNGVGFGISREIIDYGDIVEHDSLLMTGKREDSGIKGVVGLPATLANKKVLPKVVLEEATEDHQNPSAVKKAGICCRKKRGPLTEEKKARKKEKKRKQRAEKNRKLGVKRLKLQPVQKPKTIKHCRHYLMGRCHEGDKCNFSHDVVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFATIGSCSRGNACMFSHQMPAKQDVATSSNDSKAELKPKLLGYTKLSKPPNISSSSTSEQKQISDSKGIQPHFNSEKEAADTVKKPLTLVPKGISFINVSKSSSPKPGMVTPNKGNSVQIGTFTDRSASSGTALNPMNPEKTPVVAPKGINFLSFGKGRVSSSKSTVCSFLSKENGIRLSHKESLGTPEQASLQKDDCTKVGSGTKQSVLQTAACSNEILKQNQSVAEKMDLDFQGKASIYRYSNDVQSSSTSHQDHSLSRSVQEGVKTYTPQTSTLTSSLLPTSPFVSGQSSEGLASGHHKHAFNSAQRALLSTLSFAAEHESNIKLKFPVGASAFKLEMNKDV 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1310 1226 ProSiteProfiles Zinc finger C3H1-type profile. 878 901 IPR000571 GO:0046872
Acco13g1310 1226 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 385 1212 IPR045124 GO:0003723|GO:0045892
Acco13g1310 1226 MobiDBLite consensus disorder prediction 516 538 - -
Acco13g1310 1226 Coils Coil 128 148 - -
Acco13g1310 1226 Gene3D - 850 915 - -
Acco13g1310 1226 SMART c3hfinal6 848 874 IPR000571 GO:0046872
Acco13g1310 1226 SMART c3hfinal6 820 845 IPR000571 GO:0046872
Acco13g1310 1226 SMART c3hfinal6 876 900 IPR000571 GO:0046872
Acco13g1310 1226 MobiDBLite consensus disorder prediction 1128 1147 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 928 951 - -
Acco13g1310 1226 ProSiteProfiles Zinc finger C3H1-type profile. 848 875 IPR000571 GO:0046872
Acco13g1310 1226 MobiDBLite consensus disorder prediction 374 401 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 1066 1083 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 785 805 - -
Acco13g1310 1226 Pfam CCCH-type zinc finger 823 844 IPR041367 -
Acco13g1310 1226 Coils Coil 783 803 - -
Acco13g1310 1226 Gene3D - 777 849 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 790 805 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 379 401 - -
Acco13g1310 1226 SUPERFAMILY CCCH zinc finger 819 844 IPR036855 GO:0046872
Acco13g1310 1226 ProSiteProfiles Zinc finger C3H1-type profile. 819 846 IPR000571 GO:0046872
Acco13g1310 1226 MobiDBLite consensus disorder prediction 925 962 - -
Acco13g1310 1226 MobiDBLite consensus disorder prediction 1062 1083 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco13g1310 zf-CCCH_4 1.4e-05 CL0537