Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1307 ATGGACGCTGTCTTCTCCCTCCCCGAGGGTGCCAGAGCTCATTTTCTGCAGTCTATATTGCAGTCCTCAGGCTGCTCTTACATTTGCCTTTGGTCCTATGATTCCCTCTTATCCAACAGTCGTTTGCTGTGTTTGGATGGATTGTTCAATGTGAGAATCAACCAACCGAGCACCTCTTTGGGGAGCAGTGTGGCTCAAAGGCTTTTTGACCAATATAGGAGTTTGCTCTTTGATGTCAATGATAACGACGGTATTCCAGGACTGGCTTTCAAGAACCGCACTTACCTTGAGCTACAGCAACCAGATCTTCTGAGACTAGCATGGACACCAATACAAACACAATTTTATCAGGAAGCAAGGATTAAGACTGCAGTCTTCATGGGGTGCAACAAAGGAGAAATGGAACTTGGCTTCCCAAACATGTCTCAAGATGATATTCAAACAGCACTGAGGAATTGGTTCCCAGATGAATTTTCCAGATTAAATAATCAGCAGCAGCCAAACATAGATCAGAGTCAGAACCAGAACCCACCATCATCATCTTCATCATCATTAAGATCACTCTCATTATCTGCAGGAAGCCCTGAATACTCATCCCTTGTCTTCAGCATTCCAGCTACATCTTCCCCTCATTTTCCTCCTCCTCTTCCTCTGGCTCAAGTCACAGCACAGAGCCCATTTCGCACACCAGACTCCGAAAATGAAGCCATCATGAGAGCAATCCTTTGCGTCCTTTCCACTACTACTACTACTTCTTCTTCATCACCTTCTTCTCTTCCTCAGAATTTGCCTAATCCTAATTATATGGTTCATCCTGAGGCTAGTGCCTTCAAGAGGTACAGCCCCACCGGCATTATCCCGCCACCGCGGTCGCCGTTATCCCAAATGGGACCGGATCATCAATTGCGGAGGCAGAATTTATTCAAGAGGTCATTGACGTTCTTTAGAGGCTTGAATTTCATGAGAATGAGAGAACGGACTCAAACAAGTCGCCCCAGTACTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGGCGTGAAAAGCTCAACGAAAACTTTCAGAATCTTAGATCACTTCTTCCTCCAGGAACCAAGAAGGACAAAGCTTCGATACTAACAACAGCAAAGGAAGTACTGAGCTCATTAACAGCGGAGATAGAAAAGCTTAGAGAGAGAAACAAGCAGCTGGAGGGAACAACAATAACAACATCTTCATCAATGGCGGCGGCTGTGAAAGAAACAAGGGGTGACGATGATCATGAAATCGTAAATGAAAGGTTAAATGTGAGAATTTCATCTTCAGGCGAACAACCACCACCAGAATCAAGCTCGTCCTCAGAAGAAGGGAGAATGGTGGATTTGGAAGTGACGGTGAGGGGACAAAATTCTCAAGTGGATATTCTGATTCGATTACTGGGATTTCTGAAACAAGATCAAAATATAAGCTTGATTTCTATGGAAGCTATCACTCATATAGCTCATGCCACTTCCTTCAATCGAATCTCCGTAAAGCTGAGGGTTGAGGTAAAGGAATGGGACGAATCTGCCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTGGCACAGTAA 1596 0.4461 MDAVFSLPEGARAHFLQSILQSSGCSYICLWSYDSLLSNSRLLCLDGLFNVRINQPSTSLGSSVAQRLFDQYRSLLFDVNDNDGIPGLAFKNRTYLELQQPDLLRLAWTPIQTQFYQEARIKTAVFMGCNKGEMELGFPNMSQDDIQTALRNWFPDEFSRLNNQQQPNIDQSQNQNPPSSSSSSLRSLSLSAGSPEYSSLVFSIPATSSPHFPPPLPLAQVTAQSPFRTPDSENEAIMRAILCVLSTTTTTSSSSPSSLPQNLPNPNYMVHPEASAFKRYSPTGIIPPPRSPLSQMGPDHQLRRQNLFKRSLTFFRGLNFMRMRERTQTSRPSTTQLHHMISERRRREKLNENFQNLRSLLPPGTKKDKASILTTAKEVLSSLTAEIEKLRERNKQLEGTTITTSSSMAAAVKETRGDDDHEIVNERLNVRISSSGEQPPPESSSSSEEGRMVDLEVTVRGQNSQVDILIRLLGFLKQDQNISLISMEAITHIAHATSFNRISVKLRVEVKEWDESAFQEAVRRVVADLAQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1307 531 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 528 IPR044658 -
Acco13g1307 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Acco13g1307 531 SMART finulus 340 389 IPR011598 GO:0046983
Acco13g1307 531 Coils Coil 373 400 - -
Acco13g1307 531 Gene3D - 333 405 IPR036638 GO:0046983
Acco13g1307 531 CDD bHLH_AtbHLH_like 339 391 IPR045239 -
Acco13g1307 531 Coils Coil 340 360 - -
Acco13g1307 531 MobiDBLite consensus disorder prediction 166 190 - -
Acco13g1307 531 MobiDBLite consensus disorder prediction 430 450 - -
Acco13g1307 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 400 IPR036638 GO:0046983
Acco13g1307 531 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1307 Acco-ChrAcco13 12202228 12207884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1307 1 531 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.156 1.97e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco13g1307 HLH 4.6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g1307 13 12202228 12207884 Acco13g1307 13 12202228 12207884 ECH