Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1297 ATGCCTGTTATAGATCTTAATATTGTTGATGATCATCAAAGCCATGAGCTAATTTTTAGCCCAACCCACCAACCTTCTTATTCTTATACTTCCTCTTCTCTATCATCACCATCATGCCCTATTCTCTTTAACCCCTCTCATCAGCTTCAGGATCACGCTGGATCTTCTTACTTGGAGTCCATGAACTTACAAAATGATCGTGATGAGGCTTGTGGGAAGAATATTATTGGTTCAAGTGGTGGATCATGGAATGATCCGGATCAAGAAAAGGGTGGCGGTGGTGGTGTTGAGATCAGAAAGAGGGGTCTGAAACTGAAAGTTTGGAAGAGATCATCAGCAGCATCAGGATCATCAGAGAAGGAGGAGGATGAAGAAAATAATCATAATCATAATCAAACTGAGGATAATTATGATTCAATGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGTGGCTTCATCAGATAATAATAATATTAATAGTAGTAAGGCTTCTTCTTCTTCTTACTCCGAAGACCAGGATCGTCAGAATCAGAACCAGCAAAGACCATTATTATTGTCTCCTAGAGGAAACGATAATAGTAGCAGCAGCAACAATTCTTCAACCCAAAGTAATACTAATAATAATAATAATATTACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCCTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCGGCTGCCGCCGCTGCTTTGAATGGTGGGTCGCCGGATCTGAAGGCGGCTGAGAAATCTTCGGTGAAAAGGACTTACAAGGTTCACAGCAGCAAAGAGAAGAAGTTGAAATTTGAGCGTGAAACTACTCATAATCAGATCATGAAGAAGAAGCACAAGGTTGAAGATGATGATGATCATCAAGACAAGGAAGGTAATAATAATAATTCAAGAGGGAAATCATCTTCGTCGTTGCCATCAATAATAAACAAGTTTAGTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAGAACTTGGCAACTTCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTTCATGGATGA 1167 0.4122 MPVIDLNIVDDHQSHELIFSPTHQPSYSYTSSSLSSPSCPILFNPSHQLQDHAGSSYLESMNLQNDRDEACGKNIIGSSGGSWNDPDQEKGGGGGVEIRKRGLKLKVWKRSSAASGSSEKEEDEENNHNHNQTEDNYDSMKWMPSKMRMMRKMMVASSDNNNINSSKASSSSYSEDQDRQNQNQQRPLLLSPRGNDNSSSSNNSSTQSNTNNNNNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAALNGGSPDLKAAEKSSVKRTYKVHSSKEKKLKFERETTHNQIMKKKHKVEDDDDHQDKEGNNNNSRGKSSSSLPSIINKFSSFEDFTVSLMSKNLATSSQVFPQDEKEAAILLMALSCNGLVHG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1297 388 SMART GATA_3 215 267 IPR000679 GO:0006355|GO:0043565
Acco13g1297 388 FunFam GATA transcription factor 21 215 317 - -
Acco13g1297 388 Gene3D - 219 257 IPR013088 GO:0006355|GO:0008270
Acco13g1297 388 MobiDBLite consensus disorder prediction 276 326 - -
Acco13g1297 388 MobiDBLite consensus disorder prediction 115 135 - -
Acco13g1297 388 CDD ZnF_GATA 220 252 IPR000679 GO:0006355|GO:0043565
Acco13g1297 388 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Acco13g1297 388 ProSiteProfiles GATA-type zinc finger domain profile. 219 251 IPR000679 GO:0006355|GO:0043565
Acco13g1297 388 MobiDBLite consensus disorder prediction 159 214 - -
Acco13g1297 388 MobiDBLite consensus disorder prediction 276 337 - -
Acco13g1297 388 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 387 - -
Acco13g1297 388 MobiDBLite consensus disorder prediction 72 140 - -
Acco13g1297 388 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
Acco13g1297 388 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1297 Acco-ChrAcco13 12024421 12026037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1297 138 388 C2C2-Gata Transcription Factor Family AT4G26150 39.689 1.40e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco13g1297 GATA 5.3e-17 CL0167