Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1285 ATGGAAGATGATGGGACGATATGCAACACAAGGCTGAGTCTAGGGCTTGGAATAGGAAGCTATGAGATGCCATTAAAGAAGCAGAAATTTGAAGAAGCCATTATTGGTAAAGAATTGATCAGTTTGAAGGCCAGAATCGATGAAGAAGAAGAAGAAGATGATGAAAAGATCGATAATAGAAATAGTTTCAGAAAGAAACTGAGACTCACCAAGGAACAATCCGCCATGCTTGAAGATAGCTTTAAGCTCCATAGCTCTCTCAACCCACTCCAGAAACAAGAACTTGCTCAGCGATTGAATCTGAAGCCCAGACAGATCGAAGTTTGGTTTCAAAACAGAAGAGCGAGGAAAAAGTTGAAGCAGACGGAATTAGACTGCGAGTTGCTGAGAAAATGCTGCGAAAACCTAAGAAAGGAGAACAGAATGTTGAAGAAGGAAGTAGAGGAACTACGAGGCGGCCTGAAAGTTGAAGCGCCGTCGTCCTCTTCGTCGTCGTTAATACTAGGAAGCGGTAATAATAACAGTATTCAACTGTCTAGAGCAGCAGCCACACTGGCTCTATGTTCCTCTTGTGAGAAGCCATTAATCAATGGCCATTGA 600 0.4267 MEDDGTICNTRLSLGLGIGSYEMPLKKQKFEEAIIGKELISLKARIDEEEEEDDEKIDNRNSFRKKLRLTKEQSAMLEDSFKLHSSLNPLQKQELAQRLNLKPRQIEVWFQNRRARKKLKQTELDCELLRKCCENLRKENRMLKKEVEELRGGLKVEAPSSSSSSLILGSGNNNSIQLSRAAATLALCSSCEKPLINGH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1285 199 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Acco13g1285 199 CDD homeodomain 64 121 IPR001356 GO:0003677
Acco13g1285 199 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Acco13g1285 199 SMART HOX_1 62 124 IPR001356 GO:0003677
Acco13g1285 199 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 193 - -
Acco13g1285 199 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Acco13g1285 199 Coils Coil 39 59 - -
Acco13g1285 199 Coils Coil 119 153 - -
Acco13g1285 199 Pfam Homeobox associated leucine zipper 120 153 IPR003106 GO:0006355|GO:0043565
Acco13g1285 199 Gene3D - 69 116 - -
Acco13g1285 199 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
Acco13g1285 199 SMART halz 120 164 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1285 Acco-ChrAcco13 11898707 11900305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1285 49 193 Homeobox Transcription Factor Family AT4G37790 54.483 1.02e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco13g1285 Homeodomain 7.2e-16 CL0123