Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1279 ATGGCGAAACGTCCAGAAAATCTCGTGCAATATATTTGCCCTCGACATGGGAGTGTCGATAATGAACCTAGTAAACCTTGGTGCCCTACTTGCAATCTTTACCTAGGAAGACCCTCACATATGGAGACCCTCGGGGTAGACCCTTCTGTTAGAAGGCAAGAAGCCTTCAATGCTCCAAAACTGCCGGCCCCCCAATCTGCCATTGAAAGGTTGCAAGATTTGGAGATTACTCAGGATATGCTAGAAAGTCAGAACAAATGTGTAATCTGTACTGAAGATTTTGAACTTGGAGAAACAGTAAAATTCTTGGAGTGTGGCCACTTCTTCCATGACAGTTGCATTGTTACATGGCTGAAAGAGCATAGAAACCAATGCCCCGTTTGTCGTGCCACATTATTCATACCCCGTAAGATTCCCACCCCATGGGATACTGATCGTCGAGATCGTGGTTCCTCCTCGGGCTCTTCTTCACGTGCTTGA 480 0.4625 MAKRPENLVQYICPRHGSVDNEPSKPWCPTCNLYLGRPSHMETLGVDPSVRRQEAFNAPKLPAPQSAIERLQDLEITQDMLESQNKCVICTEDFELGETVKFLECGHFFHDSCIVTWLKEHRNQCPVCRATLFIPRKIPTPWDTDRRDRGSSSGSSSRA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1279 159 SMART ring_2 87 128 IPR001841 -
Acco13g1279 159 SUPERFAMILY RING/U-box 74 138 - -
Acco13g1279 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Acco13g1279 159 CDD RING-H2_PA-TM-RING 87 129 - -
Acco13g1279 159 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Acco13g1279 159 FunFam E3 ubiquitin-protein ligase RNF181 51 134 - -
Acco13g1279 159 PANTHER SI:CH211-59O9.10 60 132 - -
Acco13g1279 159 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1279 Acco-ChrAcco13 11768230 11768709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1279 62 129 C3H Transcription Factor Family AT1G68180 51.471 4.13e-17 73.6