Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1255 ATGCGGGATAGTGAGAAGAATTTAAATAGCAGAGGATCTAGAAAAGACAAGAATTCAAATGCGCAAACTGAGTTAAAGCCATGCCTATCGTTGAGATTCAAAACCAGTAGCCCAAAATCCCAAGTAAAAAAGCATAAATTAAAATCAAAATCTCAGGCGCACAGAGTTGGTGCAAATAAATCAAGGAAGGCTGTCACTGACTCTTCTAAGGAGGACCCAAGCAAGGAAAACTTGATTATTAGAAAATGTCTACATAAAACCAATGGAAATCCATCACAGAAGCCCAGCACATCAAAGCCTCAAGGTGAAAAGGTTTCTCTTGGCTCTGAGAAAGAGGGTAATGATGTTGATGGGGAGGTATATATTCAGAAGCTTAAAAGGAGAAGGAGAAAAAAGAAAAGGCAAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGGCTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTTATTGATGCTTATGCTGGAGAAGGTTGGAAAGGTCAGAGTCAAGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCGGAAGCAGATTTTACAATGTAAGCTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCGGTGGGTAGCATTGAGGGCTCTGTCATTGCTCCAGATGGATCTGTTTACCACGAACATATATTCTGTGCGAAGTGCAAGTTGCGTGAAGCCTTCCCTGATAATGATATTATACTATGTGATGGCACCTGTAACCGAGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGACACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTAGAGGCAATAAATGCACATCTTGGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCATCCCTGATGGCGATACTGGTTTACTGAATCCAGAAGAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCACAATATCAGTGCAGAGGATATTGATGGTGATGCATCTAATGATTCAGGCACTTCTACCAGTCTATGGAATTCAGATGATGGATATTCTCCAGCAATAGGAAGGGAAAGCAATGACCATGAATTTTTCTCAGTGAATAGTTGCGTAGATTCTGATGAATCAGGAGAGATAGCATGTGGCCGGAGGCAGCGAAAAGCAGTTGACTACAAGAAACTCTATCATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAGCAAGTTAGTGAAGATGAAGACTGGGGTCCAGGCAGAAAAAAGCGAAGAGAAAAAGAATCTGACGCTGCTAATACTCTGATGACTCTCCATGAAAGTGAGAACAAATCTTCCAATAATGAGCAGAATGTGATAACGGAATTTTCTTCAGACTTACAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCGGTTGAGAAGCTTCGCCAGGCCTTTTCAGAGAATGAACTTCCTCCAAGATCCGTGAAGGAGAGTCTTTCGAAAGAGTTGGGACTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTGGCTCTAAGAGCCAGAAAGCAAGCAGAAGGAGCAGAAGAACAGACTCAAAGCATCACTTCTAGAAGCCCAAAAGATTCTAATCTACAAAACCCAGAGATAGAGGATTTGACCCCAAAGGAAACCTCAAAAGTAACGTTGACTGACCCCCAGACACATGCTACAAATGACAGCCGCAAAAAGGGCTTAAAGTCATCCCGCGGTAAGCCTTTGAAGAAAAGGAAACAAGAGATATCTCCACCTCAATCAAAACCAAATGGCAAGAAGGACTTGGTTGAGTTCAGTGACGATGTTAGCTTGAAGAAACTGTTGAAAGCAACGAGGAAGAAAGTAACTTATAAATTTGAGGGAGACTCTGAAGCAGCAGAGTTAGAATTTGAAAGACTTAGCGAACTGAAGAGTAGAATAGACAGTATCAGACAAAAAGTTCTTACAATTAAAAGTCACGCAGCCAAAGATTCAGAAGAATCCAAATCCAAAGAGTGGGTTATGTATGTACCCGTAGCTGAGTTAAAAGAAAAAAGCAGGGCTTTCAATGGCGTCAACCACTCTTCTTGTAAGGCTAGTGAGTGCCTTAGAATTGACAATGAGTTGTGGATTCTCTTGCTACTCGAGATGAAGTTTCGAAAGAAATGA 2265 0.415 MRDSEKNLNSRGSRKDKNSNAQTELKPCLSLRFKTSSPKSQVKKHKLKSKSQAHRVGANKSRKAVTDSSKEDPSKENLIIRKCLHKTNGNPSQKPSTSKPQGEKVSLGSEKEGNDVDGEVYIQKLKRRRRKKKRQRNNVDLDDASRLQRRLRYLLIKIKREQNLIDAYAGEGWKGQSQEKIRPEKELLRARKQILQCKLSIRDAIHQLDTLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEAINAHLGTHFSLDSTWQDVFKEEASIPDGDTGLLNPEEEWPSDESDDDDYNPERREDSHNISAEDIDGDASNDSGTSTSLWNSDDGYSPAIGRESNDHEFFSVNSCVDSDESGEIACGRRQRKAVDYKKLYHEMFGKDAPALEQVSEDEDWGPGRKKRREKESDAANTLMTLHESENKSSNNEQNVITEFSSDLQSKRPCFRLPRHAVEKLRQAFSENELPPRSVKESLSKELGLDADKVSKWFKNARYLALRARKQAEGAEEQTQSITSRSPKDSNLQNPEIEDLTPKETSKVTLTDPQTHATNDSRKKGLKSSRGKPLKKRKQEISPPQSKPNGKKDLVEFSDDVSLKKLLKATRKKVTYKFEGDSEAAELEFERLSELKSRIDSIRQKVLTIKSHAAKDSEESKSKEWVMYVPVAELKEKSRAFNGVNHSSCKASECLRIDNELWILLLLEMKFRKK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1255 754 MobiDBLite consensus disorder prediction 331 345 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 1 113 - -
Acco13g1255 754 SUPERFAMILY Homeodomain-like 490 552 IPR009057 -
Acco13g1255 754 FunFam pathogenesis-related homeodomain protein 490 554 - -
Acco13g1255 754 SUPERFAMILY FYVE/PHD zinc finger 226 292 IPR011011 -
Acco13g1255 754 MobiDBLite consensus disorder prediction 38 57 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 435 478 - -
Acco13g1255 754 CDD homeodomain 491 551 IPR001356 GO:0003677
Acco13g1255 754 MobiDBLite consensus disorder prediction 86 104 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 555 579 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 60 82 - -
Acco13g1255 754 Pfam PHD-finger 234 289 IPR019787 -
Acco13g1255 754 Coils Coil 122 142 - -
Acco13g1255 754 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Acco13g1255 754 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Acco13g1255 754 MobiDBLite consensus disorder prediction 549 634 - -
Acco13g1255 754 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 23 718 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 361 379 - -
Acco13g1255 754 FunFam pathogenesis-related homeodomain protein-like 226 286 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 319 387 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 435 461 - -
Acco13g1255 754 SMART HOX_1 490 552 IPR001356 GO:0003677
Acco13g1255 754 Pfam Homeodomain 499 543 IPR001356 GO:0003677
Acco13g1255 754 CDD PHD_PRHA_like 234 286 IPR045876 -
Acco13g1255 754 SMART PHD_3 234 287 IPR001965 -
Acco13g1255 754 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Acco13g1255 754 MobiDBLite consensus disorder prediction 1 21 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 22 37 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 462 478 - -
Acco13g1255 754 MobiDBLite consensus disorder prediction 346 360 - -
Acco13g1255 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Acco13g1255 754 Gene3D - 490 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1255 Acco-ChrAcco13 11159150 11166777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1255 137 550 Homeobox Transcription Factor Family AT4G29940 60.047 1.57e-161 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Acco13g1255 PHD 2.6e-11 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g1255 13 11159150 11166777 Acco13g1255 13 11159150 11166777 ECH