Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1211 ATGGAACAATGGCGGAAGAATTCTAAAAGTCAACCTGGTGGTTGGTTAAGCCGCAATATGGGTTGTCAGATCATTTGGCAGTTGTCCGTCGAAATACGTCGTCTCTGTTCCGTTGACGACGGCGCCGTTCCCATGAGCCCTCCTCATCATACTGTTGAAGCTTCGCCGCGCCGTTACGCCGTCTCTGTTCCGTTGACGGCGGCCCCGTTCCGTTCAACTGTCTGCGCCGACTCCCACCTCAAAGTTCAATCTCCTGCTCCTCCCTTCGTCTTCAACCATTCGATCTTGAGTGTTCATCAGTTCCCTCTTTCTGTTTTCTTTATTGCCTGGTTACTGACGCTGATATTTTATGGACGCCAAATCATCATTTTCGTGGTCGGCCTGGTCGTGGTTGTTGGCTTATCAGTATTTGGCATATTCCAATATCGTAAAAGATTTAAAGAGAACAAAAGGCATCACAAAGAGTTTTTGACATTAACTATCGAAAAGTTTCTGAATGATTTGGAAAGAGAGAGCCCAACAATGTTCACCTCAGACAACCTCGTACGTGCAACAAACAACTACTCCGACATGTTGGGGTCAGGAGGTTTTGGATCAGTCTATAAAGGAACTTTCAGTGATGGAACTGTTGTTGCAGTCAAAGTTCTACATGGCACTTTTGACGAGAGAATGGAGCAGCAATTCATGGCTGAAGTCGGCACAATTGGAAAAGTGCGTCATTTAAATCTGGTGCGCCTCATCGGATTTTGCATTGAAAAGAATACGACAGCTCTAGTTTACGAGTACATGAGCAATGGCTCTCTGGACAAATATCTGTTCGGTGAAAATAAGGACTTAGCACTTGAGATGCTACAGAAGATTGCAGTTGAAACGGCCAAAGGAATTGCTTACTTGCATGAAGAATACCAGGAGAGGATCATCCACTACGACATAAAACCAGAAAATATCCTTTTGGATGATAATTTCCGTTGTAAAATTGCTGATTTTGGTTTAGCCATGCTTTGTAACAGGGAAAAGTCTTATGTCACTATGACACGTCAGAGGGGGACACCAGGTTATGCTGCACCAGAACTTTGGATGCCTTTTCCTGTAACTCACAAGTGTGATATTTATAGCTTTGGAATAATGTTATTAGAAATCATAGGAAGAAGGAGACACTTTGATCCGAGCCTCCCAAGTATTCAACAATGGTTACCAAGATGGGTTTGGATAAGGTTTGAAAATAAAAATCTAGAAGAGCTGATAACAGAATGTGGTATTGAAGATAAAGAGAAAGAGAAAGTGAAAAGAATGATAAGGATAGCGCTGTGGTGTGTTCAGTATAGACCAGATTTGAGACCTAAAATGAGTGATGTGGTGAAAATGTTGGAAGGCTCCATGGATGTTCGAGAACCTCCAAACCCATTTCAACAATTGTTGGAGGAAAATCAGGGAATTGAAGCATCACAAATGGATAGTGGTAGTGATGATGATGATGGCTCATATATACTCTTGAGGCCGGGAACCGAATCTTCCACCGTGCCTAGTGTGTGA 1533 0.4299 MEQWRKNSKSQPGGWLSRNMGCQIIWQLSVEIRRLCSVDDGAVPMSPPHHTVEASPRRYAVSVPLTAAPFRSTVCADSHLKVQSPAPPFVFNHSILSVHQFPLSVFFIAWLLTLIFYGRQIIIFVVGLVVVVGLSVFGIFQYRKRFKENKRHHKEFLTLTIEKFLNDLERESPTMFTSDNLVRATNNYSDMLGSGGFGSVYKGTFSDGTVVAVKVLHGTFDERMEQQFMAEVGTIGKVRHLNLVRLIGFCIEKNTTALVYEYMSNGSLDKYLFGENKDLALEMLQKIAVETAKGIAYLHEEYQERIIHYDIKPENILLDDNFRCKIADFGLAMLCNREKSYVTMTRQRGTPGYAAPELWMPFPVTHKCDIYSFGIMLLEIIGRRRHFDPSLPSIQQWLPRWVWIRFENKNLEELITECGIEDKEKEKVKRMIRIALWCVQYRPDLRPKMSDVVKMLEGSMDVREPPNPFQQLLEENQGIEASQMDSGSDDDDGSYILLRPGTESSTVPSV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1211 510 PANTHER OS07G0415500 PROTEIN 116 470 - -
Acco13g1211 510 FunFam serine/threonine-protein kinase PBS1-like 159 262 - -
Acco13g1211 510 SMART serkin_6 186 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1211 510 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524
Acco13g1211 510 Gene3D Phosphorylase Kinase; domain 1 161 262 - -
Acco13g1211 510 MobiDBLite consensus disorder prediction 464 510 - -
Acco13g1211 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Acco13g1211 510 Gene3D Transferase(Phosphotransferase) domain 1 263 470 - -
Acco13g1211 510 Pfam Protein tyrosine and serine/threonine kinase 189 456 IPR001245 GO:0004672|GO:0006468
Acco13g1211 510 FunFam Putative receptor-like protein kinase 263 464 - -
Acco13g1211 510 MobiDBLite consensus disorder prediction 470 484 - -
Acco13g1211 510 ProSiteProfiles Protein kinase domain profile. 186 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1211 510 SUPERFAMILY Protein kinase-like (PK-like) 170 457 IPR011009 -
Acco13g1211 510 CDD STKc_IRAK 192 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1211 Acco-ChrAcco13 10391785 10394731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1211 176 471 Receptor kinase-like Gene Family AT1G66980 42.763 8.39e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Acco13g1211 PK_Tyr_Ser-Thr 1.1e-50 CL0016