Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1209 ATGGCTTCCCAACAATATGAGCATTCTGTTAAAACGACAACACTCTTTTTCAAGCCTATTCACTCTGAGAGCCTCACCGATGAGCTAATGATTCCGAGAAAGTTTATGAAGAAATATGGGGATGTCTTCTCTGAAACTGTGTTTCTGAAGCTTCCAAATGATGAAGAATGGAAAATAAATTTAGGAAGAAGAAATAATGGTGAAGTTTGGCTTGAGAATGGATGGAGAGAATTTGCAGAGCATCATTCTCTCTTCAAGGGACGACTGTTGGTGTTTGGGTGTGACGATACAACTTCTCATCGTTTAAACGTTATCATAATGGATCTCACCACTTCAGAAGAAATAGACTATCCTTCAAACCATAACGTTGAAGCTAAGCGGGCCAGAAATGAGCAACAAGAAGAATCTCCGTGTGGAACAAGAAAGAACGACAAAAAGTGCGAAGGTAGCCAACGAGGCAGGTTTAATTCTAAGATGCTTAAAGTGAAAGGTGATGTTGTTAAGGGGAATATAGGAAGAGCACTTGAGAGAGCTAAAGCTTTCAAATCTCAGTATCCCTCTTTCATGATTGTTGCTAGACCATACTACGTTAATGCTTCTTGTCAAGTGGCTATACCATCAAAGTTTGCCATAGAGTTCTTGGCTTCAAAAAAGAGTGGACAAAGTACGAATCTTCGGACTTCGAATGGGAGGGTTTGGATCACTAAGTTCATCGCAAGGAAACAGGGGACAAGAACAAAATTTGAACTCTCTACTAGTGGTTGGAAGCCATTTGTGAAGGACAATGACTTGAAAGTAGATGATGTTTGTGTTTTTGAGCTCATCGATGAACCAACTCATCATGAACTCAATTTTCGGGTTTCAATCTTTCGAAATATGAATAATCCTTCAGACAATGCTCCTTTGTCTCTATCTCAAGCTAAAAGAAAGCATACCGTTACCAGTGGCCAAGGACAGATAAACAAGAGGGTGAAAATTAAAAGAGAGACTGAGGAGCTTCAAGTTCCTCCAAAGAAGCCTAAAGAATGTTCTGCTGCTCATAGTTTCAACTCAGAAAACCCCTTCTTCAAAGTAATCATAGGAAAATCCCAACATTATCAGGCAGTGCCAGTTAGTTTTTTAAGGAAGTATTGTGAACAAGGGAAACATGTTGCAGAGCTGCAGGTTAGGGATAGATCATGGAGGGTTAAGTTGATCATAACTTGTTGGGGATCACAGGATTATGGCTTCTTTTCGGAAGGATGGGCTGCATTTATAAGAGGGAATGATCTACAAAAAGGAGATGCTTGCTTCTTTGAGCTTCTGAACAGGGATGACTTCTATGTCATGAAAGTTTCCATTTTCAAACACCCCTTAACTTAA 1362 0.3979 MASQQYEHSVKTTTLFFKPIHSESLTDELMIPRKFMKKYGDVFSETVFLKLPNDEEWKINLGRRNNGEVWLENGWREFAEHHSLFKGRLLVFGCDDTTSHRLNVIIMDLTTSEEIDYPSNHNVEAKRARNEQQEESPCGTRKNDKKCEGSQRGRFNSKMLKVKGDVVKGNIGRALERAKAFKSQYPSFMIVARPYYVNASCQVAIPSKFAIEFLASKKSGQSTNLRTSNGRVWITKFIARKQGTRTKFELSTSGWKPFVKDNDLKVDDVCVFELIDEPTHHELNFRVSIFRNMNNPSDNAPLSLSQAKRKHTVTSGQGQINKRVKIKRETEELQVPPKKPKECSAAHSFNSENPFFKVIIGKSQHYQAVPVSFLRKYCEQGKHVAELQVRDRSWRVKLIITCWGSQDYGFFSEGWAAFIRGNDLQKGDACFFELLNRDDFYVMKVSIFKHPLT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1209 453 CDD B3_DNA 355 449 IPR003340 GO:0003677
Acco13g1209 453 SUPERFAMILY DNA-binding pseudobarrel domain 183 287 IPR015300 -
Acco13g1209 453 ProSiteProfiles B3 DNA-binding domain profile. 188 293 IPR003340 GO:0003677
Acco13g1209 453 ProSiteProfiles B3 DNA-binding domain profile. 352 451 IPR003340 GO:0003677
Acco13g1209 453 Gene3D - 9 110 IPR015300 -
Acco13g1209 453 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 337 450 IPR044837 -
Acco13g1209 453 CDD B3_DNA 15 100 IPR003340 GO:0003677
Acco13g1209 453 SUPERFAMILY DNA-binding pseudobarrel domain 349 444 IPR015300 -
Acco13g1209 453 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
Acco13g1209 453 ProSiteProfiles B3 DNA-binding domain profile. 14 110 IPR003340 GO:0003677
Acco13g1209 453 SMART B3_2 356 451 IPR003340 GO:0003677
Acco13g1209 453 SMART B3_2 188 293 IPR003340 GO:0003677
Acco13g1209 453 SMART B3_2 16 110 IPR003340 GO:0003677
Acco13g1209 453 CDD B3_DNA 186 291 IPR003340 GO:0003677
Acco13g1209 453 MobiDBLite consensus disorder prediction 123 151 - -
Acco13g1209 453 Pfam B3 DNA binding domain 188 286 IPR003340 GO:0003677
Acco13g1209 453 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Acco13g1209 453 Pfam B3 DNA binding domain 365 442 IPR003340 GO:0003677
Acco13g1209 453 Gene3D - 167 294 IPR015300 -
Acco13g1209 453 Gene3D - 337 450 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1209 Acco-ChrAcco13 10348948 10352677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1209 294 449 B3 DNA Binding Superfamily AT3G18990 28.125 1.75e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco13g1209 B3 5.5e-18 CL0405