Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1208 ATGAAGTATATCCGAACCGGCAGCCTCAAGAGGCTCTTCTCCTGGAAACGACGCAGTTTCGATGGGCAAGTTCTCACCAGCGATGAAAAAGTTGACAACTTTGAGGTTCTTCCACCCCCAGAACAGCCTCCTCGAAGACCCACTTGGAAATGCTTCTCCCACGAAGAACTCTTCGATGCCACCAATGGCTTCAGCTCAGAGAATTTGGTCGGAAAAGGAGGCTACGCGCAGGTTTACAAGGGGACATTGAAAGATGGGTACGAGATTGCGGTGAAGAGGCTCACAAGAACTTCGAGCGATGAGAGGAAAGAGAAGGAGTTTTTGACAGAGATTGGCACAATTGGTCATGTTAATCATCCAAATGTGTTGCCTCTTCTGGGTTGTTGTATTGAAAAGGGGCTTTACCTTGTCTTTGAGCTTTCATCCAAAGGTTCTGTTGCCTCTCTTCTTCATGATCAAAACTTGCCTCCCATGGACTGGAAAACAAGACATAAGATAGTTCTTGGGACAGCTCGTGGCCTCCATTACTTGCACCAAGGCTGCAAAAGAAGGATAATCCATAGAGACATCAAGGCCTCAAACATTCTATTAACTTCAGATTTTGAACCACAGATATCTGATTTCGGGCTGGCAAAATGGCTTCCTAATCAATGGTCTCATCATTCAATTGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAGTACTATTTACATGGAATAGTAGATGAGAAAACAGACGTGTTTGCTTATGGGGTTTTCTTGCTTGAAGTCATCTCAGGGAGGAAACCGGTGGACGGCTCTCACCAAAGCTTACACAGCTGGGCAAAACCATTATTGAACAAAGAGGAAATCGAAACACTGGTAGATCCAAAGTTAGAAGGAGCCTACGATTTATCTCAGTTACAAAGACTTGCCTTTGCAGCTTCTCTCTGTATCCGAGCTTCTGCAACTTGGCGACCTACCATGAGCCAGGTATTGGAGATAATGGAGGAGGTAGAGATGAACAAAGAGCAGTGGAAGATGCCAGAGGAAGAGGAAGAACAAGAAGAAGAATTCTGGGGATTTGAGGATCTAGAATGTGAATATGAAAGTTCATTCTCTCTGACTCTACCAGATTCCATTGCAAGCTCTTGA 1140 0.45 MKYIRTGSLKRLFSWKRRSFDGQVLTSDEKVDNFEVLPPPEQPPRRPTWKCFSHEELFDATNGFSSENLVGKGGYAQVYKGTLKDGYEIAVKRLTRTSSDERKEKEFLTEIGTIGHVNHPNVLPLLGCCIEKGLYLVFELSSKGSVASLLHDQNLPPMDWKTRHKIVLGTARGLHYLHQGCKRRIIHRDIKASNILLTSDFEPQISDFGLAKWLPNQWSHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAYGVFLLEVISGRKPVDGSHQSLHSWAKPLLNKEEIETLVDPKLEGAYDLSQLQRLAFAASLCIRASATWRPTMSQVLEIMEEVEMNKEQWKMPEEEEEQEEEFWGFEDLECEYESSFSLTLPDSIASS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1208 379 SUPERFAMILY Protein kinase-like (PK-like) 39 332 IPR011009 -
Acco13g1208 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Acco13g1208 379 CDD STKc_IRAK 70 333 - -
Acco13g1208 379 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Acco13g1208 379 Pfam Protein tyrosine and serine/threonine kinase 67 329 IPR001245 GO:0004672|GO:0006468
Acco13g1208 379 SMART serkin_6 64 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1208 379 PANTHER OS08G0249100 PROTEIN 44 360 IPR046958 -
Acco13g1208 379 Gene3D Phosphorylase Kinase; domain 1 40 140 - -
Acco13g1208 379 FunFam Putative receptor-like serine/threonine-protein kinase 32 140 - -
Acco13g1208 379 ProSiteProfiles Protein kinase domain profile. 64 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1208 379 FunFam Putative receptor-like serine/threonine-protein kinase 142 356 - -
Acco13g1208 379 Gene3D Transferase(Phosphotransferase) domain 1 142 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1208 Acco-ChrAcco13 10318191 10322363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1208 52 335 Trihelix Transcription Factor Family AT5G38560 44.898 1.50e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Acco13g1208 PK_Tyr_Ser-Thr 5e-42 CL0016