Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1173 ATGAGTTTCCTCCCTAATACTTCTCTTCACTCAAACCTCCCAGCAGACGACAGTAATAATGCTTCATTACTGAACCTAAATTTTCTGCTTGAGCCTTCTTCTTCTTCTGCAGGTTCCAACTCCAAGGAGCCCAGAGTATTTTCGTGCAATTATTGCCAGAGAAAATTCTACAGCTCTCAAGCTCTAGGGGGTCACCAAAATGCTCACAAGCTTGAACGAACCCTAGCCAAGAAAAGCAGAGAGCTAATAAGTAGTTCTATTTCTTCTTCTTCCATTAATGATCCTTACAACAACAATAATGGCGTATCAAGAGGAGGATCCAGCCCTTATCTCGGTCATCCGGTTGGGTCATCGGATCTTGGCGTGTTCGTGAACCAAGGTCAAGGTGGTGGAAGGACGGCCACGAGGGATTTTAGCTATGGTTCCAAGGAAATTGTTCAGGAGGATATTAACCAGCTTGACCTCTCTCTAAGGCTCTAG 480 0.4479 MSFLPNTSLHSNLPADDSNNASLLNLNFLLEPSSSSAGSNSKEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELISSSISSSSINDPYNNNNGVSRGGSSPYLGHPVGSSDLGVFVNQGQGGGRTATRDFSYGSKEIVQEDINQLDLSLRL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1173 159 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Acco13g1173 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Acco13g1173 159 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 122 IPR044246 GO:0009788
Acco13g1173 159 FunFam Zinc finger protein 2 29 94 - -
Acco13g1173 159 Gene3D Classic Zinc Finger 18 102 - -
Acco13g1173 159 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Acco13g1173 159 MobiDBLite consensus disorder prediction 87 106 - -
Acco13g1173 159 MobiDBLite consensus disorder prediction 87 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1173 Acco-ChrAcco13 9946079 9946558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1173 1 159 C2H2 Transcription Factor Family AT5G57520 46.243 1.22e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco13g1173 None None None