Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1165 ATGAAAAGCCGTGCGCCCACCCCTCCTTCTTCATTTCAACCTTCCTCCACAAACCGTTTCAGCGTTTCGACCCTCAGCTTCCCTTCCCACCCCACTCAGCTTAACTTCCTACTTCACCGGAACGAGATTTCTTGTATGGGAATCGAGAGGGGAAGCCTTAAGGATCTTCGCGGCGTCTGGACGTTGCCTCCGAAGCCCTGTGACTCTTGCAAATCGGCGGCCGCGGCGCTTTTCTGCCGAGCTGACTCTGCTTTTCTGTGTATGCTCTGTGACAACAAGATTCACTCCGCCAATAAGCTTGCGTTGCGGCATGAGCGTGTGTGGATGTGCGAGGTTTGCGAGCAAGCCCCTGCCTCCGTCACGTGCAAGGCCGACGCCGCCGTGCTCTGCGTCACTTGCGATTCGGATATCCACTCCGCTAACCCGCTAGCTCGCCGTCACGAGCGTGTTCCCGTGGAGCCTTTCTTCGATCCCGCAGACTTTGTGGCGAAATCTTCCGCTGCTGCCTTTAATTTGTTGGTTCCAAATGATAACGGAATTGGATTCCCTCAGGAAGAATCCGAATCAGCGTCATGGCTAATTTCTAACCCGAAGATCATGGATGTTCCGGATATCAAATCGGGCGAGATGTTTTTCCCTGAAATGGAGTATCCATTCCTTGATTTCGATTATTCAAACTCATTTGATCAGAATAACAATAACAGAGCGGGGAACAACGATAGCGTAGTTCCCGTTCAAGCTCCGGTTATGAATCACACAGAGAATTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCTTCAATTAGCTATCCAACGCAGTCGTTTAGTCGCCAAAGTATATCTTCTTCTTCGGTTGATGTTGGAGTGGTGCCGGACGGAGGAAACGCGGTGTCAGAAATCTCGTTAACTTTCGGCGGCAACATGAGTAACAGCTCGGAATCAAGCGGAATCATATCGGCCGGCAATTCCACAAACCAATCGGGAAGTTCGCTGAGTGGTATGAACCGGGAAGCTCGGGTTTTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAGAAAACCATCCGATACGCTTCGCGAAAGGCTTATGCAGAAACTCGGCCGAGGATCAAAGGCCGGTTCGCCAAACGGACCGAAATGGAGTCGGATTTCGACCGGTTATTTAGCTCGGTCGACCCCACCACAAATCTATTGCTGGATACTCAGTACGTCGTCCCCTCGTTTTAA 1233 0.5101 MKSRAPTPPSSFQPSSTNRFSVSTLSFPSHPTQLNFLLHRNEISCMGIERGSLKDLRGVWTLPPKPCDSCKSAAAALFCRADSAFLCMLCDNKIHSANKLALRHERVWMCEVCEQAPASVTCKADAAVLCVTCDSDIHSANPLARRHERVPVEPFFDPADFVAKSSAAAFNLLVPNDNGIGFPQEESESASWLISNPKIMDVPDIKSGEMFFPEMEYPFLDFDYSNSFDQNNNNRAGNNDSVVPVQAPVMNHTENCFDIDFCRSKLSSISYPTQSFSRQSISSSSVDVGVVPDGGNAVSEISLTFGGNMSNSSESSGIISAGNSTNQSGSSLSGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDFDRLFSSVDPTTNLLLDTQYVVPSF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1165 410 Pfam CCT motif 337 379 IPR010402 GO:0005515
Acco13g1165 410 ProSiteProfiles Zinc finger B-box type profile. 105 152 IPR000315 GO:0008270
Acco13g1165 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 66 392 IPR045281 GO:0009909
Acco13g1165 410 Pfam B-box zinc finger 107 152 IPR000315 GO:0008270
Acco13g1165 410 Pfam B-box zinc finger 65 106 IPR000315 GO:0008270
Acco13g1165 410 MobiDBLite consensus disorder prediction 316 335 - -
Acco13g1165 410 ProSiteProfiles Zinc finger B-box type profile. 67 109 IPR000315 GO:0008270
Acco13g1165 410 MobiDBLite consensus disorder prediction 316 336 - -
Acco13g1165 410 SMART bboxneu5 62 109 IPR000315 GO:0008270
Acco13g1165 410 SMART bboxneu5 110 152 IPR000315 GO:0008270
Acco13g1165 410 CDD Bbox1_BBX-like 66 109 - -
Acco13g1165 410 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Acco13g1165 410 CDD Bbox1_BBX-like 110 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1165 Acco-ChrAcco13 9834868 9836681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1165 46 410 C2C2-CO-like Transcription Factor Family AT5G57660 50.653 1.80e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco13g1165 zf-B_box 4.6e-07 No_clan