Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1160 ATGATTTATTGTATTTCGTTGTTAATAGCTCCGATTAGTGCAGGAGATGATGCAGGGACGTCACTCCTGGAAGGGAAGAAATTGATAATTGGACTTCCTTATACTTCAGGGTATGCCCAGTTTGTGGATATTAGACAACTCAATTCTGCTAATAACAATCATCAGGTCGACCAGGTTAGGGGTTATTCTATTGACGTTTTCGAAGCTACAATAGCCTACCTCGAGCGTCAACATTATAATATTTCTTTCGAGTTCAGAGCTTTTGTAAACGGCGATGGAAACACTGCTGGGGATTACAACGCACTTGTTCACCAAATTTCTGAAGGAAAGTATGATGCTGTGGTGGGAGATGTGACGATTTTGGCAAATCGGTTGAACGATGCAGATTTTACGGTACCATATACACATTCTAACGTGAAGATGCTTGTAAAGAGTCGACATGATCCTCGGTTGAATATGTGGAATTTTGTGCGACCGTTTAGTTGGAGTCTTTGGTTGTGTATTGCTATCGACTCCATATTTACAGGAGCTATCATACTATTCATGGAACGTAACGTCCAAAGAGATTCAACTCTTGAAAATTCACCACGTAGGAAACAATTCCGTGGGGTTTCTATCCTCTGGTTTCCTGTTGTGCAAGCAGTTTTTCCTGAAAGAGAATCATTGGCCAAAAATTGCTCTAAGTTTGTGCTGGTGATGTGGTTGATACTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCCTATCATCGATCTTAACAGTACATCAGTTACGACCTCAATACCTTAGTGAGAAAGATGTTATAGAAGATCCCAACATTAACGTTGGATACAAAAGTGGTTCATTTGTGGGAGACTTGTTGCCAATCAATAGGTCAAGGATGAAGAACTGCTCTTCCATTAAAGAATATAAGGATGCTTTAGACAAAGGAAGCCATAAAGGTGGTGTTGATGCTATTTTTGATGAAGCTCCCTACTTTAAAGTCTTCTTCAGCCATTATGGCTCCGATAATTATGCCATTGTTGGAACTAGGCACCGTGCTGGTGGATTTGGTTTTGCATTTCGTAAGGGCTCCAACTTAACCTCGTACTTTTCTAAAGCCATACTAAATATCAGCGAGAGTAATGAAATAGACAAAATTGAGGAGAGATATTTTGGGGGCAACGACGAATATGGTGAAAACCAAGACATATTTAAATCATCGTCAATAGATGCAAGTCCTAGTCTTACTGCTTACAGTTTTGCAGGTTTGTTCATGGTTACTGGAATTCTTTCACTGTTAGCTTTGCTAATCTCTGAAAATCATATTTGGCGAAAGCCTATTATGCTCGCAAAGACTTATAGCCAACAATTTTTTACTTCGAATTCTTCAAGAACTAGTTCATTAGAGGAAGGTTCTACCACAAAATCAAATGTTAACAAACAATTTTCTGCAGATAATGGAACATTGCCTGTATAA 1461 0.3915 MIYCISLLIAPISAGDDAGTSLLEGKKLIIGLPYTSGYAQFVDIRQLNSANNNHQVDQVRGYSIDVFEATIAYLERQHYNISFEFRAFVNGDGNTAGDYNALVHQISEGKYDAVVGDVTILANRLNDADFTVPYTHSNVKMLVKSRHDPRLNMWNFVRPFSWSLWLCIAIDSIFTGAIILFMERNVQRDSTLENSPRRKQFRGVSILWFPVVQAVFPERESLAKNCSKFVLVMWLILVFVLMQSYTACLSSILTVHQLRPQYLSEKDVIEDPNINVGYKSGSFVGDLLPINRSRMKNCSSIKEYKDALDKGSHKGGVDAIFDEAPYFKVFFSHYGSDNYAIVGTRHRAGGFGFAFRKGSNLTSYFSKAILNISESNEIDKIEERYFGGNDEYGENQDIFKSSSIDASPSLTAYSFAGLFMVTGILSLLALLISENHIWRKPIMLAKTYSQQFFTSNSSRTSSLEEGSTTKSNVNKQFSADNGTLPV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1160 486 Gene3D - 352 386 - -
Acco13g1160 486 Pfam Ligand-gated ion channel 388 424 IPR001320 GO:0015276|GO:0016020
Acco13g1160 486 MobiDBLite consensus disorder prediction 458 486 - -
Acco13g1160 486 Gene3D - 154 286 - -
Acco13g1160 486 SMART GluR_14 27 388 IPR001320 GO:0015276|GO:0016020
Acco13g1160 486 Pfam Bacterial extracellular solute-binding proteins, family 3 58 387 IPR001638 -
Acco13g1160 486 SUPERFAMILY Periplasmic binding protein-like II 4 388 - -
Acco13g1160 486 Gene3D - 20 153 - -
Acco13g1160 486 Gene3D - 299 351 - -
Acco13g1160 486 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 453 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1160 Acco-ChrAcco13 9681273 9683815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1160 25 432 Ion Channels AT2G29120 37.317 1.07e-65 226