Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1131 ATGGGCAGAAGCAGAACCTTGTTAGAAGTGAAAGGAGCAACCTTTTTGTCTCCCCCGCCGCCGCCATACTGGCTTTCGCCTCCCAACAACGTTGTCGGATCTGAGGATTCCAATGTTAAAGACAACGTAAGCCCCAGCGTACTCCTCATCATCATCATCCTCGCCATCGTCTTCTTCGTCTCTGGTTTGCTCCACCTTCTTGTTCGCTATCTATGGCGGCCGCAAACCAGAGACCCAGACGATTTAGACGATGTAACTGTTCTTCAGGGTCAGCTTCAACAACTTTTTCACCTCCATGATTCTGGGGTCGACCAATCCTTCATCGACACCCTCCCTGTTTTCCTCTACAAGGCCATCATCGGACTCAAGAACCCTCTCGATTGCGCCGTTTGTCTGTCGGAATTTGAGCCGGACGACAAGCTCCGATTGTTGCCCAAATGCAGCCATGCGTTTCACATGGAGTGTATCGACACGTGGCTCTTGTGTCACTCCACGTGTCCTATCTGTCGAGCTTGCTTGCTCAGTGACTTCTCCTTCAGCAACGCTTGTTCCCCCACTGTTCTGGTCCTTGAATCTGGGAGTGACAACAACTCCAGAGAGATTGACCCGGATATCGACGAACTCGGATTCGGGTCGACCCGGTTCGAATTGAATCAGGATTCCGGTGAAGTGGTTACAGTGAAGCTGGGAAAGATCAGGAATGTAGATAACAACAATGGTGAAGGTAGTAGCAGAACTGGTGATTTTAACGATAATGCAGAAGCCAGAAGGTGTTTCTCCATGGGGTCTTTTGCTTATGTGATGGACGAAAGCTCTTTGCTTCATGTACCCATTAGAGCACAAATCAAAAAGAAGCATGCTTTGTATTTGAATCCAGGAAACAGACTTGCAGTGTCAGAGTGTGACTGTGAATCGAGGAGGGACTTCAGGTTCTCTGGTTTAGAAGAGAAAAGAGTTGAAGAAGAAGAAGCAGCAGCAAAATGGTCGAGCTCAGGGGTTATAACCAGAAAGGAGAGCTTGTCGGTGTCGAAAATTTGGCTTCGGGAGAAGAAAGAGAAGCGAAAAAATCGGCTTGAGGATTCGACGAGGAGGGCTGTGTCGTTTAGGTTTCCATTGCAGAGAAATAATGGAGAAGATGAAGATGAAGATGGTGGTGGTGGTTTGAAGGAGAGGAATGGGAAATTGGGATCAAGAAGTACGATTTCTGAGATGGATATTACAAAATGGGAAGAAAATAATGAAGGAGGAGGAAGTAGTGAATATGGATATGATGATGAAAACCAGAGTTGTTACAGTGTAGATTCTTCGCAGGTTAGTAGAGCTCCTTCATTTGCAAGAAGAACTCTACTTTGGCTCACAGGAAGACAGCATCATCAGAACAAGGTTGTTCATTCATCCTCTGTTTCTGGAGATTTGTAG 1419 0.4665 MGRSRTLLEVKGATFLSPPPPPYWLSPPNNVVGSEDSNVKDNVSPSVLLIIIILAIVFFVSGLLHLLVRYLWRPQTRDPDDLDDVTVLQGQLQQLFHLHDSGVDQSFIDTLPVFLYKAIIGLKNPLDCAVCLSEFEPDDKLRLLPKCSHAFHMECIDTWLLCHSTCPICRACLLSDFSFSNACSPTVLVLESGSDNNSREIDPDIDELGFGSTRFELNQDSGEVVTVKLGKIRNVDNNNGEGSSRTGDFNDNAEARRCFSMGSFAYVMDESSLLHVPIRAQIKKKHALYLNPGNRLAVSECDCESRRDFRFSGLEEKRVEEEEAAAKWSSSGVITRKESLSVSKIWLREKKEKRKNRLEDSTRRAVSFRFPLQRNNGEDEDEDGGGGLKERNGKLGSRSTISEMDITKWEENNEGGGSSEYGYDDENQSCYSVDSSQVSRAPSFARRTLLWLTGRQHHQNKVVHSSSVSGDL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1131 472 Pfam Ring finger domain 127 170 IPR001841 -
Acco13g1131 472 SUPERFAMILY RING/U-box 107 179 - -
Acco13g1131 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Acco13g1131 472 FunFam E3 ubiquitin-protein ligase ATL6 91 176 - -
Acco13g1131 472 CDD RING-H2_EL5-like 127 170 - -
Acco13g1131 472 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Acco13g1131 472 MobiDBLite consensus disorder prediction 369 441 - -
Acco13g1131 472 MobiDBLite consensus disorder prediction 422 441 - -
Acco13g1131 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 40 346 - -
Acco13g1131 472 SMART ring_2 128 169 IPR001841 -
Acco13g1131 472 MobiDBLite consensus disorder prediction 374 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1131 Acco-ChrAcco13 9299742 9301160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1131 37 467 C3H Transcription Factor Family AT2G18650 42.026 6.53e-81 255