Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1109 ATGTTACAATGCAATAGAAACTCAATTTTTGAATGGATTGTCACGAACATATTTCATGTTCATTTGTGCGAGAGATATGATCATTCTCACCGTTGTTCCATAATCATGGCTCTTCCTTGGGTTTATCTTCTCTTCCTTCTCTCTTGCTCTGGACTCTGTTTCTCTTACGAGCCTCGTAACCATGAAGTGGAGGCTTTGATAAGCCTAAGAGTATCTCTGGATGATCCTCATGGGGTATTAAGCAACTGGGATGAGAACTCTGTAGACCCTTGTAGTTGGGCTATGATCACTTGCTCTTCTGATTCACTTGTTATAGGCTTGGGAGCTCCAAGCCAATCTCTTTCTGGAACTTTATCTGCTGCCATAGGAAATCTGACAAATCTTCGACAAGTTTTACTGCAGAACAACAATATATCTGGCCAAATCCCACCGGAACTTGGCACCCTTCCTAAGCTACAGACTTTAGATCTTTCTAATAATCGATTCTCTGGTGTGATTCCCAGTTCCTTAAGTCACTTGGATGGTCTTAAGTACTTGAGGCTGAACAACAATAGCTTGTCTGGTCCCTTTCCCGTGTCACTAGCCAAAATCCCTCAACTTGCTTTCTTAGACTTGTCCTATAACAATCTCAGTGGACCTGTGCCCAAGTTTCCAGCTCGATCTCTCAATGTTGTGGGAAACCCATTAATCTGTGGAAGCATCTCTACTGAAGGTTGCTCTGGATCAACAATCCTCTTGCCTGTTTCGTTCTCTCTTCCATCTTCACAAGGAAAGCACAATTCCAAGAAAATAGCAATTGCACTTGGGGTCAGCCTTAGCTTTGCTTGTCTCCTACTGTTGTCTTTAGGGCTTTTCTGGTATAGAAAGAAAAGACAGCACCGAACACTTTTGTATATCAGTGATTATCAGGAAGATGGACTTGTTCGTTTGGGGAATCTTAATATTTTCACTTTCAAACAGCTCCAACACTCAACAGATAATTTCAGCTCTAAGAACATACTTGGTGCTGGGGGGTTTGGGAATGTGTATAGGGGCAAGCTCGGAGATGGGACACTGGTTGCTGTGAAGAGGTTGAAGGATGTCACGGGAAGCGCCGGGGAATCACAGTTTCGAACTGAACTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAGAAGCTTCTGGTTTATCCTTACATGTCTAATGGAAGTGTGGCATCCAGACTTAGAGGCAAACCTGCTCTAGATTGGAACACAAGAAAGAGGATAGCGATTGGAGCTGCTAGAGGTCTTCTCTATCTACATGAGCAGTGTGATCCAAAGATAATACATAGAGATGTTAAGGCTGCTAATGTGCTTCTGGATGAGTACTATGAAGCCATTGTTGGTGATTTTGGCCTTGCTAAGCTCCTTGATCATGCTGATTCTCATGTCACTACTGCTGTTCGTGGCACTGTGGGCCACATCGCGCCAGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACTGATGTATTTGGGTTCGGCATTCTCTTGTTGGAGCTCATAACTGGAATGACTGCTCTCGAGTTTGGAAAAACAGTAAATCAGAAAGGTGCAATGCTAGAGTGGGTGAAGAAAATACAGCAAGAAAAGAAAGTGGAAGTGTTAGTGGACAAAGAGTTAGGAAGAAACTATGATAGGATAGAGGTGGGGGAGATGCTGCAAGTAGCTATACTTTGCACACAGAATCTACCAGTCCACCGCCCCAAAATGTCAGAAGTGGTCAGAATGCTCGAAGGAGATGGCCTTGCTGACAAGTGGGCAGCTTCACAGAATCATAATAATAATAATCTCAGCATGAACAACTTTCACAGCCACAGTAACAACAATAGTTCATCTTCTCGCCCAAGCAGCACCCTTGCCTCAAAACACGATGATGATAATAATAATAATGCTCATGATCGTCCCAGCATGTTTGGCATGGGAATGGATGGTGATGATGATGATGAACACTCTTTGGATTCCTATGCCATGGAACTTTCTGGTCCTAGGTAA 2052 0.4352 MLQCNRNSIFEWIVTNIFHVHLCERYDHSHRCSIIMALPWVYLLFLLSCSGLCFSYEPRNHEVEALISLRVSLDDPHGVLSNWDENSVDPCSWAMITCSSDSLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGQIPPELGTLPKLQTLDLSNNRFSGVIPSSLSHLDGLKYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPVPKFPARSLNVVGNPLICGSISTEGCSGSTILLPVSFSLPSSQGKHNSKKIAIALGVSLSFACLLLLSLGLFWYRKKRQHRTLLYISDYQEDGLVRLGNLNIFTFKQLQHSTDNFSSKNILGAGGFGNVYRGKLGDGTLVAVKRLKDVTGSAGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVKKIQQEKKVEVLVDKELGRNYDRIEVGEMLQVAILCTQNLPVHRPKMSEVVRMLEGDGLADKWAASQNHNNNNLSMNNFHSHSNNNSSSSRPSSTLASKHDDDNNNNAHDRPSMFGMGMDGDDDDEHSLDSYAMELSGPR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1109 683 FunFam Putative LRR receptor-like serine/threonine-protein kinase 59 241 - -
Acco13g1109 683 ProSiteProfiles Protein kinase domain profile. 328 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1109 683 Pfam Leucine rich repeat 150 210 IPR001611 GO:0005515
Acco13g1109 683 MobiDBLite consensus disorder prediction 608 638 - -
Acco13g1109 683 Pfam Leucine rich repeat N-terminal domain 60 99 IPR013210 -
Acco13g1109 683 MobiDBLite consensus disorder prediction 608 683 - -
Acco13g1109 683 SUPERFAMILY L domain-like 60 231 - -
Acco13g1109 683 SMART serkin_6 328 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1109 683 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 41 608 - -
Acco13g1109 683 Pfam Protein tyrosine and serine/threonine kinase 331 597 IPR001245 GO:0004672|GO:0006468
Acco13g1109 683 Gene3D Phosphorylase Kinase; domain 1 298 404 - -
Acco13g1109 683 FunFam Somatic embryogenesis receptor kinase 1 298 404 - -
Acco13g1109 683 SUPERFAMILY Protein kinase-like (PK-like) 311 598 IPR011009 -
Acco13g1109 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Acco13g1109 683 SMART LRR_typ_2 173 204 IPR003591 -
Acco13g1109 683 SMART LRR_typ_2 125 147 IPR003591 -
Acco13g1109 683 SMART LRR_typ_2 149 172 IPR003591 -
Acco13g1109 683 Gene3D Ribonuclease Inhibitor 59 241 IPR032675 -
Acco13g1109 683 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Acco13g1109 683 Gene3D Transferase(Phosphotransferase) domain 1 405 617 - -
Acco13g1109 683 PRINTS Leucine-rich repeat signature 197 210 - -
Acco13g1109 683 PRINTS Leucine-rich repeat signature 152 165 - -
Acco13g1109 683 FunFam Somatic embryogenesis receptor-like kinase 1 405 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1109 Acco-ChrAcco13 9094819 9099705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1109 43 543 Receptor kinase-like Gene Family AT2G23950 76.846 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco13g1109 Pkinase 3e-41 CL0016