Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1106 ATGCCAGATTTAGGAAGCTTATCGATCTCAGAAGCTCTTGAGCTTCCTAAATGCCCTAATCTGAATGCCACTGCTGAACCATCTGATATTAACAGTTCTTTGTACACAGTCCCAGTTAAATCCCTTGGTAGTTGTTACATTTCCAACCACAATCTTCTATTCCCTGTTCTTCAGCAGGATGAAGCCCAGAGTGGAAATGAATTCAGGGTTTCAAAGCGGAGCCGTGGTTCTTTGGATCGGGTTAATAAGGCAGCGAACGACAGGGGTTCAGAGGATCATGTTAAAGATTGGTCTGAGAAGAAGATACATTCCGGGCTTCTTAGGCTCAGCTGCACTCTTCCATTTCTTGTTGGCGCTCCGAAAATGGTTGAATGTCTTTTTTGTCATCATTTTGTCCACCCCGGGAAGGAGATTATATGTTCTGTTCGTGGCTGTGAAAGAGTCTACCATATGGAATGTGCAAAAGAAGCTGGTGGGATCTCAAATCTCAAAAAATTCAAGTGCCCTCATCATGCTTGCTTTGTTTGTAACCATAAAGTACACTTGCGGTGTGCGCGGTGCACAATGGCATTTCATACTAAATGCGCACCGTGGCCAGATGCTGTGATGCTTTCAAAGGATCATCCTGGACGAGCTGTTTGTTGGAGGCATCCTACTGATTGGCGGTTGGATAGAAAGGTCAATTTTTTCTTTTCACCAGAACCTTTTGTTTTCACTTGCTGGCTGACAGGACTGTTGTATTTGTTGGATGAGCAGCATGAAGTTTCAACAAGTAACATGGAGGAAGTGTTTTGCCGTTTGCCTCTTCCTTATGTCAATGAGGAGTTCAAGATTGATGTCACGTGGAAAGACATGGAGAGTAAGCTTGAACCACCTCCATATGTACACATAAGACGCAATGTATACCTCGTGAAGAAGAAGCGCAGTGATTCAGATGATGGCGCTGGGTGCACCAGTTGCTCTTCAAATTCTACATGTTCTGATGATTGCGTGTGCAGAGTTCAATGCATAAGCTGCTCTAAGGCTTGTCGCTGCTCAGAGAATTGCAATAATCGGCCGTTTCGCAAGGATAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGTTGGGGAGTTGAGGCCGCTGAAACCATAAAAAAAGGCGAATTTGTAATTGAATATATTGGAGAAGTAATAGATGATGCTTTATGTGAAAAAAGGCTTTGGGATATGAAATACAAAGGTGAGCAGAATTTTTATATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACATCACGCTTTTTAAACCATAGCTGCGACCCCAACTGTGCTTTGGAGAAGTGGCAAGTTGATGGTGAAACGCGCGTGGGTGTTTTTGCCGCCCGCTCAATAGAAGTTGGAGAACCGTTAACATACGATTACAGATTTGTGCAATTTGGACCAGAGGTAAAATGCCACTGTGGTGCTCCAAATTGTCAAGGCTTTCTTGGGACCAAAAAGAAGATTGAGAAGGTTAACCTTTGCTGGGGCTCAAAAAGGAAGAGAACAACATGTGTTACAGTGGGGACCAAAAAGGGAACTTCACCTGCTTGCATTGCAATAGTAACAGCTGTATGA 1617 0.4323 MPDLGSLSISEALELPKCPNLNATAEPSDINSSLYTVPVKSLGSCYISNHNLLFPVLQQDEAQSGNEFRVSKRSRGSLDRVNKAANDRGSEDHVKDWSEKKIHSGLLRLSCTLPFLVGAPKMVECLFCHHFVHPGKEIICSVRGCERVYHMECAKEAGGISNLKKFKCPHHACFVCNHKVHLRCARCTMAFHTKCAPWPDAVMLSKDHPGRAVCWRHPTDWRLDRKVNFFFSPEPFVFTCWLTGLLYLLDEQHEVSTSNMEEVFCRLPLPYVNEEFKIDVTWKDMESKLEPPPYVHIRRNVYLVKKKRSDSDDGAGCTSCSSNSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKDKKIKIVKTELCGWGVEAAETIKKGEFVIEYIGEVIDDALCEKRLWDMKYKGEQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCALEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGTKKKIEKVNLCWGSKRKRTTCVTVGTKKGTSPACIAIVTAV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1106 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 220 IPR013083 -
Acco13g1106 538 PANTHER SET DOMAIN PROTEINS 77 517 - -
Acco13g1106 538 Pfam SET domain 369 474 IPR001214 GO:0005515
Acco13g1106 538 CDD SET_ASHR3-like 359 497 - -
Acco13g1106 538 SMART set_7 358 481 IPR001214 GO:0005515
Acco13g1106 538 SMART PHD_3 173 218 IPR001965 -
Acco13g1106 538 SMART PHD_3 124 172 IPR001965 -
Acco13g1106 538 ProSiteProfiles SET domain profile. 358 475 IPR001214 GO:0005515
Acco13g1106 538 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 528 IPR025787 -
Acco13g1106 538 SMART PostSET_3 481 497 IPR003616 -
Acco13g1106 538 FunFam Histone-lysine N-methyltransferase 271 508 - -
Acco13g1106 538 Gene3D SET domain 271 516 IPR046341 -
Acco13g1106 538 ProSiteProfiles AWS domain profile. 312 358 IPR006560 GO:0005634|GO:0042054
Acco13g1106 538 SUPERFAMILY SET domain 283 494 IPR046341 -
Acco13g1106 538 ProSiteProfiles Post-SET domain profile. 481 497 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1106 Acco-ChrAcco13 9057364 9062293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1106 339 496 C2H2 Transcription Factor Family AT2G23740 36.313 5.83e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco13g1106 SET 3.1e-19 No_clan