Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1058 ATGGGTTTTGGGGCATTTGGTTCCATTATAGTTCTGACATTTTTCTTTGAGCATTTGGCTTGCCAGCAACCAAATACTGATGACTTCTTTGTGTCTGAGTTCTTGAAGAACATGAGTTCAGCATCATCATCATCATCCTCCTCCTCACAAGCCTTCAATCTCTCTGCTTCTGTTTGTTCATGGCCAGTTGTTTCCTGTGATGCAAATAAAGAACATGTTGTTGAGTTGATAGCTTCTGGTATGGGACTTTCTGGGCCTATTCCTGATAACACCATTGGCAAGCTCAACAAGCTACAAATTTTGGATCTTAGTAAAAACAAAATCACGGCTTTGCCTTCTGATTTCTGGAGCTTAGGCTCTTTGAAAGTTCTTAACCTCTCCTCCAATCAGATTTTTGGTTCACTTGCCAGCAACTTTGGCAACTTTGGTCTCCTTGAAGCCTTTGACTTGTCCAGCAACCATTTTTCTGGGGAAATTCCTGAAGCCATTGGCTCCCTTGTGAGTTTAAAGATCCTCAAACTTGACAAAAACAAGTTTGAGCACAACATACCTTCTGGGATTCTACAGTGTCAGTCTCTAGTTTCTGTTGACCTTTCACTAAATCAGCTTAATGGCGCTCTTCCTCAAGGTTTCGGAGCTACTTTTCCAAAACTTGAAAGCTTGAACCTTGCTGGGAATAATCTTCATGGCCATGATTCAGATTTTTCAGGATTGAAATCCATTACTAGTGTTAACATATCTTCGAATTCCTTTCAGGGTTCTTTTTTGGGTATGTTTAAGGAACAGTTGGAGGTAATTGATCTTAGCAGGAACCAGTTTGAGGGTCAGATTTCTCAGTTAAATCTCAACTATAATTTGTCTCATTTGGTTTATCTGGATTTATCTGAGAATAGGCTTAGTGGGGAAATTTTCCAGTATCTGAATGCAGCCCAGAACATCAAACACCTTAATCTGGCACACAATAAGTTTGCCAGTCAGAGATTTCCACAAATTGAAAGCCTCTCAAGGTTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCCACATTCCTGCTGAAATATCAAGGCTTAGTAATTTGAGTTCACTTGATATTTCTCTGAATAATCTTATCGGGAGAATCCCATTTCTAAGAAGTGAAAACCTCCAAATTCTTGACCTTTCATTCAACAATTTGAGTGGAGAAATCCCTCAAACTGTGTTGGAGAAACTCCCATCAATGGAGAAATATAACTTCTCTTATAATAACTTAACCCTCTGTTCTTTGGGAATCAACCCCAACATCCTACAAACAGCATTCTATGGATCATCAGACAATTGCCCAATCGCTGCGAATCCGAAGCTTTTCAAAAGAACCAATGAACGCAAGGGGATGCAGCTAGCTCTGGCATTGACCCTCTCAATGGTCTGCTTACTTTCTGGACTTCTATTTCTAGCATTTGGTTGCAGAAGGAAAAGAAATTCATGGGCAATGAAGCAAACTTCCAACAAAGAAGAGCAGAACATTTCGGGTCCCTTCTCGTTCCAGACTGATTCAACTACCTGGGTTGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGCTCAACATTACATTTGCAGATCTCTTGTACTCAACTTCAAATTTTGATAGAGGGACCCTCTTAGCCGAAGGCAAATTCGGGCCTGTTTACCGAGGTTTTCTGCCTAGTGGCATTCAAGTGGCAGTTAAAGTTTTGGTTGTTGGATCTACATTGACAGATCGAGAAGCTGTTAAAGAGCTCGAGTATCTTGGTCGAATCAAGCACCCAAATCTTGTTCCTTTAACTGGATATTGCTTTGCTGGTGATCAAAGAATTGCCATATATGATTACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCACTTGGGGTACAGAGGACAGATGATTGGAGCACAGACACATGGGAAGAAGGAGATGACATGAATGGAATTCAAAATGCTAGCTCTGAAGGATTATTATCACTCTCATCTTGGCGATTTAGACACAAAATCGCCCTTGGAACTGCTCGAGCATTGGCTTTTCTTCACCATGGCTGCTCGCCTCCAATCATCCACAGAGATGTTAGAGCTAGCAGTGTCTACTTGGACTATAACTTGGAGCCAAGGTTATCCGATTTTGGGCTGGCCAAGATTTTTGGAAGCAGCTTGGATGAGGAGATTGCTCGAAGCTCACCCGGTTATGTTCCACCCGAGTTTTGTCAATCAGAATGTGACATCCCAACGCCAAAATCTGATGTGTACTGTTATGGGGTTGTGCTCTTTGAACTAATAACAGGAAAAAAGCCAGTTGGTGATGATTATCCTGAAGAGAAAGAAGGGACTTTGGTAAGTTGGGTGAGAGCATTGGTAAGAAAGAACCTAGCTTCAAGAGCTATTGATCCAAAAATTAGTGATAGAGGAATTGATGATCAAATTGAAGAAGCACTTAAGATTGGTTATCTTTGTACTGCTGATCTTCCCTCTAAGCGACCTAGCATGCAGCAGATAGTGGGACTTTTGAAAGATATTGAGCCTGCTGCTGCTGGGGGAAAATCATAA 2592 0.4132 MGFGAFGSIIVLTFFFEHLACQQPNTDDFFVSEFLKNMSSASSSSSSSSQAFNLSASVCSWPVVSCDANKEHVVELIASGMGLSGPIPDNTIGKLNKLQILDLSKNKITALPSDFWSLGSLKVLNLSSNQIFGSLASNFGNFGLLEAFDLSSNHFSGEIPEAIGSLVSLKILKLDKNKFEHNIPSGILQCQSLVSVDLSLNQLNGALPQGFGATFPKLESLNLAGNNLHGHDSDFSGLKSITSVNISSNSFQGSFLGMFKEQLEVIDLSRNQFEGQISQLNLNYNLSHLVYLDLSENRLSGEIFQYLNAAQNIKHLNLAHNKFASQRFPQIESLSRLEYLNLSKANLHGHIPAEISRLSNLSSLDISLNNLIGRIPFLRSENLQILDLSFNNLSGEIPQTVLEKLPSMEKYNFSYNNLTLCSLGINPNILQTAFYGSSDNCPIAANPKLFKRTNERKGMQLALALTLSMVCLLSGLLFLAFGCRRKRNSWAMKQTSNKEEQNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLYSTSNFDRGTLLAEGKFGPVYRGFLPSGIQVAVKVLVVGSTLTDREAVKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDYMENGNLQNFLHDLPLGVQRTDDWSTDTWEEGDDMNGIQNASSEGLLSLSSWRFRHKIALGTARALAFLHHGCSPPIIHRDVRASSVYLDYNLEPRLSDFGLAKIFGSSLDEEIARSSPGYVPPEFCQSECDIPTPKSDVYCYGVVLFELITGKKPVGDDYPEEKEGTLVSWVRALVRKNLASRAIDPKISDRGIDDQIEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPAAAGGKS 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1058 863 Pfam Protein tyrosine and serine/threonine kinase 554 849 IPR001245 GO:0004672|GO:0006468
Acco13g1058 863 PRINTS Leucine-rich repeat signature 289 302 - -
Acco13g1058 863 PRINTS Leucine-rich repeat signature 358 371 - -
Acco13g1058 863 Gene3D Ribonuclease Inhibitor 380 452 IPR032675 -
Acco13g1058 863 SUPERFAMILY L domain-like 47 427 - -
Acco13g1058 863 SMART serkin_6 550 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1058 863 FunFam Putative LRR receptor-like serine/threonine-protein kinase 511 625 - -
Acco13g1058 863 SUPERFAMILY Protein kinase-like (PK-like) 526 851 IPR011009 -
Acco13g1058 863 Gene3D Transferase(Phosphotransferase) domain 1 626 860 - -
Acco13g1058 863 ProSiteProfiles Protein kinase domain profile. 550 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1058 863 SMART LRR_sd22_2 380 407 - -
Acco13g1058 863 SMART LRR_sd22_2 95 128 - -
Acco13g1058 863 SMART LRR_sd22_2 286 309 - -
Acco13g1058 863 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 263 420 - -
Acco13g1058 863 ProSiteProfiles Leucine-rich repeat profile. 97 118 IPR001611 GO:0005515
Acco13g1058 863 FunFam Calmodulin-binding receptor kinase CaMRLK 261 377 - -
Acco13g1058 863 Gene3D Ribonuclease Inhibitor 211 283 IPR032675 -
Acco13g1058 863 Gene3D Phosphorylase Kinase; domain 1 510 625 - -
Acco13g1058 863 Gene3D Ribonuclease Inhibitor 284 379 IPR032675 -
Acco13g1058 863 FunFam Leucine-rich repeat receptor protein kinase EMS1 137 232 - -
Acco13g1058 863 Gene3D Ribonuclease Inhibitor 31 142 IPR032675 -
Acco13g1058 863 Gene3D Ribonuclease Inhibitor 143 210 IPR032675 -
Acco13g1058 863 Pfam Leucine Rich repeat 381 396 IPR001611 GO:0005515
Acco13g1058 863 Pfam Leucine rich repeat 87 131 IPR001611 GO:0005515
Acco13g1058 863 SMART LRR_typ_2 95 117 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 215 237 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 286 306 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 118 141 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 381 404 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 166 190 IPR003591 -
Acco13g1058 863 SMART LRR_typ_2 334 358 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1058 Acco-ChrAcco13 8622154 8624745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1058 46 854 Receptor kinase-like Gene Family AT5G07280 31.860 5.51e-113 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Acco13g1058 PK_Tyr_Ser-Thr 8.5e-33 CL0016