Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1052 ATGGCTGAACCACGCTGTAAAGACTCTCACTCTGCTATACTCCACGGGAAGTACGAGCTGGGTCGGCTTCTGGGTCGCGGAACATTCGCGAAGGTGTATCATGCTCGGAATTTACATACAGGGAAAAGCGTGGCGATAAAGGTTGTCTCCAAAGATAAGGTGATAAAAGTGGGAATGATGGAACAAATCAAGAGAGAAATCTCAGTGATGAACATGGTGAAGCATCCAAACATTGTCGAGCTTTACGAAGTTATGGCCAGCAAATCCAAGATTTACATCGCCATGGAACTAGTTCGAGGCGGTGAGCTCTTCAATAAAATCGCTCGAGGTCGATTGAAGGAAGACGTGGCCAGAGTGTATTTCCAGCAATTAATCTCCGCCGTCGATTTCTGCCATAGCCGCGGCGTTTACCACCGCGATCTCAAGCCGGAGAATCTGCTCCTTGACGAGCATGGAAACCTCAAGGTCACTGATTTTGGTCTCAGCACTTTCTCCGATGGTTTATTGCATACTACTTGTGGTACTCCGGCGTATGTGTCGCCGGAGATAATTAGTAGAAAAGGCTACGACGGCGCGAAATCGGATATTTGGTCTTGTGGTGTTATCTTATACGTCCTTCTCGCCGGATTTTTACCATTTCAGGACGACAATTTGGTTTCTATGTATAAAAAGATTTACAGAGGCGACTTTAGATGTCCGCGGTGGTTTTCACCGGAAGCTCGGCGACTCATCACAAAGCTCCTCGACCCGAACCCGAACACTCGAATTACCATTTCAAAAATCATGGACTCGTCGTTCTTCAAGACGTCGGTTCCGAGGGGCTTGAGGACCAAAACAGGGGAGGAATTTGAAGTGGAATGCGATGATAATTTTGAGAAATTATCGAAGCATAATCAGCCTGCCACGATGAACGCGTTCCATTTGATATCGCTATCGGAAGGTTTCGACTTGTCGCCGTTGTTCACGGAGAAGAGGGAAGAGAAAGAGGAGATGAGATTCGCGACGGCGAGGCCGGCGAGCAGCGTGATATCGAGGCTAGAGGAGGTGGCGAGGGCGGAGAGATTTAACGTGAAGAAGAGCGAGACCATGGTAAGGCTGCAGAGGCAAGAATGTGGACGGAAGGGGAGGCTAGCAATTGCGGCAGAGATATACGCCGTGACGCCATCGCTGGCGGTGGTGGAGGTGAAGAAGGATAACGGTGATACCTTGGAGTACAATCAGTTCTGCATCAAGGAGCTCCGACCCGCACTTAAAGACATTGCGTGGACGTCACCGTCGGATAACCCGACCCGGATAAACTCATAG 1305 0.4943 MAEPRCKDSHSAILHGKYELGRLLGRGTFAKVYHARNLHTGKSVAIKVVSKDKVIKVGMMEQIKREISVMNMVKHPNIVELYEVMASKSKIYIAMELVRGGELFNKIARGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVTDFGLSTFSDGLLHTTCGTPAYVSPEIISRKGYDGAKSDIWSCGVILYVLLAGFLPFQDDNLVSMYKKIYRGDFRCPRWFSPEARRLITKLLDPNPNTRITISKIMDSSFFKTSVPRGLRTKTGEEFEVECDDNFEKLSKHNQPATMNAFHLISLSEGFDLSPLFTEKREEKEEMRFATARPASSVISRLEEVARAERFNVKKSETMVRLQRQECGRKGRLAIAAEIYAVTPSLAVVEVKKDNGDTLEYNQFCIKELRPALKDIAWTSPSDNPTRINS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1052 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 419 - -
Acco13g1052 434 CDD STKc_SnRK3 17 266 - -
Acco13g1052 434 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Acco13g1052 434 ProSiteProfiles Protein kinase domain profile. 18 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1052 434 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Acco13g1052 434 SMART serkin_6 18 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1052 434 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Acco13g1052 434 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Acco13g1052 434 Gene3D Transferase(Phosphotransferase) domain 1 100 294 - -
Acco13g1052 434 Gene3D Kinase associated domain 1, KA1 297 423 - -
Acco13g1052 434 FunFam Non-specific serine/threonine protein kinase 11 305 - -
Acco13g1052 434 FunFam Non-specific serine/threonine protein kinase 298 422 - -
Acco13g1052 434 Pfam NAF domain 300 359 IPR004041 GO:0007165
Acco13g1052 434 CDD CIPK_C 304 418 - -
Acco13g1052 434 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Acco13g1052 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Acco13g1052 434 Pfam Protein kinase domain 18 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1052 Acco-ChrAcco13 8557026 8558330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1052 9 424 CBL-interacting serine-threonine protein kinases AT4G30960 72.406 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Acco13g1052 Pkinase 2.9e-74 CL0016