Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1050 ATGGAGGAGGACATGTCAAGCAAGGCATCAAGTGGTGTGGACAATATGAGCACAGAAGGTTTGGATTCAAATGGCGATTGTTGCATCGCCTGTCCAAACAAACATTCAGGACATTACAGCTGCGGTTCTCAGATATATGCTTACAGCCATCGCATTAGGCTCGGGACCGTCAAGTCTGCGGAGGAACCAGAGACCGCTTATGACAGCGCGCCTCACCAGATTTTTCCTTGGACTAATGTAGTTGTTAAGGAGCCAAACTTCCAGAGCCAATACAGCCAAGAAGCTGTTGTACTTGAGATGATAAAAGGTGGTTCATGCCAACCAATATTGCAAGGACTTCATGGGGATAATCATAGAAAGAGTGAATCAAGTACTTGTGGTCTCAACCATTCTGCAATGCAGAAAAGAGGTGACTTCTCACGCAAGCTACTTTTCAGAAAGATGCTGACTCCGAGCGATGTGGGTAGGTTGAACAGAATTGTCATCCCCAAGAAGAACGCCACCACGTGTTTCCCTGAAATCTCTAGAAGAATGGAAGAAGAAGCGAAAGCAGGCATGCTAGCTGAGGTGCTAGTGGATTTCTTCGACCGGACTATGAGGGCTTGGAAGTTTCGGTACTGCTACTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGGGGTTGGAGCAGGTTTGTGAAAGACAAGAACTTGAAGGTTAATGATGTTGTAGCCTTTTACTTGTGTGAAGTACAAAGGGAAGGGAAATTAGTGAACAAGTTCTTGATGATTGACCCTGATGTGAGAGTAGCTGAAGAAGATTCTGGTGGAAGTAGCAGCAGAAGCTCAGTGATTGAAGTTGATGATGATAACATCAATGTCGAGTTGACTCAGTCTGAAATGTTGACCTCAGTTTTTGGATTCTCTTCTTCTTATCATCCTGATGGTGTTGAGATCAAGAGGCTTGGAAAGCAAGTGATGGATTCTGAATCACCAACAAGTGTTGAAAGGAAAGGTTTTAGACTCTTTGGGGTTCAAATCAACTGA 1023 0.4448 MEEDMSSKASSGVDNMSTEGLDSNGDCCIACPNKHSGHYSCGSQIYAYSHRIRLGTVKSAEEPETAYDSAPHQIFPWTNVVVKEPNFQSQYSQEAVVLEMIKGGSCQPILQGLHGDNHRKSESSTCGLNHSAMQKRGDFSRKLLFRKMLTPSDVGRLNRIVIPKKNATTCFPEISRRMEEEAKAGMLAEVLVDFFDRTMRAWKFRYCYWKSSQSYVFTRGWSRFVKDKNLKVNDVVAFYLCEVQREGKLVNKFLMIDPDVRVAEEDSGGSSSRSSVIEVDDDNINVELTQSEMLTSVFGFSSSYHPDGVEIKRLGKQVMDSESPTSVERKGFRLFGVQIN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1050 340 Gene3D - 139 259 IPR015300 -
Acco13g1050 340 SUPERFAMILY DNA-binding pseudobarrel domain 141 242 IPR015300 -
Acco13g1050 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 339 IPR044800 GO:0003700
Acco13g1050 340 ProSiteProfiles B3 DNA-binding domain profile. 145 259 IPR003340 GO:0003677
Acco13g1050 340 CDD B3_DNA 144 250 IPR003340 GO:0003677
Acco13g1050 340 SMART B3_2 145 257 IPR003340 GO:0003677
Acco13g1050 340 Pfam B3 DNA binding domain 145 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1050 Acco-ChrAcco13 8554122 8555144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1050 34 339 RAV Transcription Factor Family AT1G50680 39.879 8.75e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco13g1050 B3 3e-23 CL0405