Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1028 ATGACTATGGAGCACCAAAGGTGTGATTTGGTTGATGAAAATGGGACCACAAAAAAGTTTCCTGTTGGTATGAGTGTTCTGGCGGTTGACGACGACCCAATTTGCCTCAAAGTGTTGGAGACTTTGCTTGTCAAATGCGAGTACCAGGTTACTACAACTAATCAGGCCGTTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACAAGTTTGACCTTGTCATTAGTGATGTAAATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCTAGTAGGACTTGAGATGGACCTACCAGTCATTATGTTGTCAGCACATAGTGATACAAGGCTTGTGATGAAGGGGGTTACCCATGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAGCTTAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATAACAGAATTCAGAATAAGGCTTCTCAGTTGGAGAAGGCGAACAATATGGCTGGGGAAGGGGATCAAGGCATCAGTTCCGAAAATAATTTGGATAAGAGTAAAATGCTGGGTAAAAGGAGGAAGGACCAAGGCGAGGATGAGGAAGAAGATGGTGAGGACAATGTTCAAGAGGATGAGGAGGACCTATCAACACAGAAGAGGCCTCGTGTAGTTTGGTCAGTTGAGCTGCACAGAAAATTTGTTGCTGCAGTCGATCAACTGGGACTTGAAAAGGCGGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTAACAAGGGAAAATGTGGCAAGCCATCTACAGAAATATAGGATCTATCTTAAAAAGGCAACTGAACACGCTAAAATTGCAGCTGCAGCATTGGGTGGCGAATCATCATACTTGCAGATGAGCTCATTAGAGGGATATGGAGAGTTTCGCACGTTATTTGGTTCAGGAGGGCTCTCGTCAACATTTGCATCTACTGGAATTTTCAGCAGACTGAACTCTCCATCTGGCTTGAACATGAGAGGAATCAATTCTTCTGGGCTGATCCAGCCCAGTCAGCCTCAAAACTCCAGCATAGCCACAAACGTTGGAAATTTTCAGACATCATCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAACATTCCAACGCCAATAGAGCTTAGTCAATCTCAACCAAGCAACTGTGCCACTGGTATTAGGCAGTTTAGTTCAATTGATGATTCAGGTGGTTTTGCAGTTGCTAGGGGATTCCTAGACAGTAAAGCCACTGTTGGTGGTGCAAACAATTCGTGTGTCACAAGTAATCCTTTGATGTTACCAGGAAGTTCACAGCAATCTCAAAACCTGGGAGGATTTAGAAATCAATCTTCTTTTGGAGCCGCTCCTTTGAACACAGAAACTTTAGATATTTGTGGTTCCAATTTCTTTGACTATACACGATGCAATGAAAGCTGCCGGGGCGCAGTCCAGTTGTCTAAATTTCCCTCTAATTCCTTGCCATTAAACGAGACTTTCACTAATGATCAGCTACCTTCTAATGTCTTAAATGTTTCTTCCTCCAATACTTACATCAGTAACAACCCAGTTGATTTTTCTTCTGCTGTTCCACTGGAGGATCTTAGGGGTGAACTAGAATGTCAAGAAGGCCTAATTGGGAATGTGGTTCAGTCTTCATGTTACACGATGAGGCAGAGCTGGGAACTACATAAGCAGGATTACAACCAAAACATGAGCTGCAATTTCAATGCTGTAAATTCACTGTTTTCTTCTAATGGAATCATGAGTACCATGGATCAGAGTTTAAATCAAAATAATTCAACATGCAGCAAGAGGCTTGACGCATCTTTCATGGATCAATTCAATGGGGCTACTCCATCAACCTCTCAATTTAATGAGGATCAGAGGTTCCCTTCAGATATGAGATTCAAATCTACTGATGCATACCAGGATGGTTTCATTGGAAATATTGGATACCTGGATGACATAATGGGTTCAATGGTTAAACGGGAGCAACATGAGATGATGATGATGATGGATGGAGAGACCCGATTTGATGCTTACCCGATTGGATCTTGTAACTGA 2055 0.4209 MTMEHQRCDLVDENGTTKKFPVGMSVLAVDDDPICLKVLETLLVKCEYQVTTTNQAVKALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDNRIQNKASQLEKANNMAGEGDQGISSENNLDKSKMLGKRRKDQGEDEEEDGEDNVQEDEEDLSTQKRPRVVWSVELHRKFVAAVDQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRIYLKKATEHAKIAAAALGGESSYLQMSSLEGYGEFRTLFGSGGLSSTFASTGIFSRLNSPSGLNMRGINSSGLIQPSQPQNSSIATNVGNFQTSSILSANSSLFQNIPTPIELSQSQPSNCATGIRQFSSIDDSGGFAVARGFLDSKATVGGANNSCVTSNPLMLPGSSQQSQNLGGFRNQSSFGAAPLNTETLDICGSNFFDYTRCNESCRGAVQLSKFPSNSLPLNETFTNDQLPSNVLNVSSSNTYISNNPVDFSSAVPLEDLRGELECQEGLIGNVVQSSCYTMRQSWELHKQDYNQNMSCNFNAVNSLFSSNGIMSTMDQSLNQNNSTCSKRLDASFMDQFNGATPSTSQFNEDQRFPSDMRFKSTDAYQDGFIGNIGYLDDIMGSMVKREQHEMMMMMDGETRFDAYPIGSCN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1028 684 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Acco13g1028 684 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Acco13g1028 684 Gene3D - 24 161 - -
Acco13g1028 684 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 266 IPR006447 GO:0003677
Acco13g1028 684 SMART REC_2 24 136 IPR001789 GO:0000160
Acco13g1028 684 SUPERFAMILY CheY-like 23 157 IPR011006 -
Acco13g1028 684 FunFam Two-component response regulator 209 272 - -
Acco13g1028 684 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Acco13g1028 684 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Acco13g1028 684 CDD REC_typeB_ARR-like 26 140 - -
Acco13g1028 684 Coils Coil 142 162 - -
Acco13g1028 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 378 IPR045279 GO:0009736
Acco13g1028 684 MobiDBLite consensus disorder prediction 159 212 - -
Acco13g1028 684 PIRSF RR_ARR_type-B 1 683 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco13g1028 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 269 IPR017930 -
Acco13g1028 684 Gene3D - 209 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1028 Acco-ChrAcco13 8371418 8374676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1028 19 385 Response Regulator Gene Family AT2G25180 54.090 2.85e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco13g1028 Response_reg 2.7e-24 CL0304