Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1027 ATGGAGAATCAAATGAGTGATTCAGGTGATAACAATGGGACTACGGCGAAGTTTCCTGTGGGTATGAGTGTTCTGGTGGTTGACAACGACCTTAATTTTCTCAAGGAGTTGGAGACTTTGCTTGTCAAATGCGAGTACCAGGTTACTACAACTAATCAGGCTATTAAGGCTTTGGAAATACTAAGGGAAAACAGGAACAAGTTTGACCTCATAATTAGTGAGGAGAATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCTGGTAGGACTTGAGATGGACCTACCATTCATCATGATGTCTGCACACAGTGATACAAGGCTTGTGATGAAGGCTGTTACAAATGGAGCTTGTGACTATTTACAGAAACCTCTTAGAATGGAAGAGCTTAAGCACATAAGGCAACATGTGGTTCAAAGAAAGAAGTTTGATAAAAAGGATCAGAATGAGCCTTCTCAGGTGGAGAAAGCAAACAATATGGCTGAGGAAGGGAATACACGCAAGCCGCGTGTTATTTGGTCACCAGAGAGACAAAAAAAATTTGTTGCTGCTATTTTTCGACTGGGACTTGAAAGGGCTGTTCCAAGGAAAGTTCTTGACCGGATAAATGTTGAAGGGCTTACACGTGAAAATCTGGCCAGCCATCTACAGAGATATAGGAACTATCTTGGAAAGCCAGATCTACAAGCTAAATTTGTTGCTACATTAAGTGGAACAATACAGCAGTTAAGTTCAAAAAATAATTCAGATCAAAGTAAAATGCTGGGTAAAATGAGGAAGGACCAAGGTGAGGATGGGGCAGAAGATGGTGTTTGGTCTCTTGAGTTGCACAAAAAATTTGTTGCTGCAATTGATCAGTTGGGACTTAGAATCGCGGTTCCCAAGAGAATTCATGACATGATGAATGATGAAGAGCTTACAACGGAAAATGTGGCAACCCATCTACAGAAATATAGGCTCTACAATAAAAGGAGAGCTCAACAAGCTGAGATGGCTGATGCATTAAGTGACCTTAAACGCCTGAAGATCGTTTCGGCCCTTTAA 1044 0.4128 MENQMSDSGDNNGTTAKFPVGMSVLVVDNDLNFLKELETLLVKCEYQVTTTNQAIKALEILRENRNKFDLIISEENMPDMDGFKLLELVGLEMDLPFIMMSAHSDTRLVMKAVTNGACDYLQKPLRMEELKHIRQHVVQRKKFDKKDQNEPSQVEKANNMAEEGNTRKPRVIWSPERQKKFVAAIFRLGLERAVPRKVLDRINVEGLTRENLASHLQRYRNYLGKPDLQAKFVATLSGTIQQLSSKNNSDQSKMLGKMRKDQGEDGAEDGVWSLELHKKFVAAIDQLGLRIAVPKRIHDMMNDEELTTENVATHLQKYRLYNKRRAQQAEMADALSDLKRLKIVSAL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1027 347 SUPERFAMILY Homeodomain-like 269 324 IPR009057 -
Acco13g1027 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 271 320 IPR006447 GO:0003677
Acco13g1027 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 221 IPR006447 GO:0003677
Acco13g1027 347 CDD REC_typeB_ARR-like 24 138 - -
Acco13g1027 347 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Acco13g1027 347 MobiDBLite consensus disorder prediction 244 264 - -
Acco13g1027 347 FunFam Two-component response regulator 268 326 - -
Acco13g1027 347 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 235 IPR045279 GO:0009736
Acco13g1027 347 SUPERFAMILY CheY-like 21 157 IPR011006 -
Acco13g1027 347 SUPERFAMILY Homeodomain-like 166 223 IPR009057 -
Acco13g1027 347 Gene3D - 165 225 - -
Acco13g1027 347 Gene3D - 268 325 - -
Acco13g1027 347 SMART REC_2 22 134 IPR001789 GO:0000160
Acco13g1027 347 MobiDBLite consensus disorder prediction 140 166 - -
Acco13g1027 347 Gene3D - 22 160 - -
Acco13g1027 347 FunFam Two-component response regulator 164 227 - -
Acco13g1027 347 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1027 Acco-ChrAcco13 8354145 8357451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1027 271 334 Response Regulator Gene Family AT2G25180 61.765 9.64e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco13g1027 Response_reg 1.8e-19 CL0304