Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1005 ATGGCTTTTCATGACCATCTACCTCAAGAACTGGCTTTTCAGCCTTTCACGGATGAGCAGCAACAGTTAAGTCAAAATAGGGACATGCAAAGGATGATGCCGTTCTCCGCCGGGGGAGGCCCGGCTCCGACGTGGCTGGTGAACAGCGGTGGGGGACCGTCTCTGCGGCAGCAGAATTTCCTCCACTTGCCGTCGGACTCGTCGGCGGATGATGTTCGAGGGAGTATGATGCCGTCCTCGGAGAGGAGCAACGATCGAGACGGCGGTGATCAGAGCCGCGGCGGCGGCGGCGGCGGGAATTGTGAATCAGAGGATTTGGCAGAGTACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTATTGTCGGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGGATCGATGCCCAGCTTCAACAGGCACAGCGTGTCCTTGAAAAATACTCTGGTCTTAGTAATGGCGTTATTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTATGTTCTATTGCTATGTGCTTTCAAAGAACAACTTCAGCAACATGTCCGGGTTCATGCCATGGAAGCTGTCATGGCTTGCTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGAGTTTCACCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACATCTACGATGGTGGCCTTGATGCTGCTGACACCCTTGGATTTGGCCCTCTTGTTCCCACTGAAACGGAAAGATCTTTGATGGAGCGTGTCAGACATGAACTTAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTGGACATACGGGAGGAGATTCTAAGAAAGAGACGTGCCGGGAAGCTGCCGGGTGACACAACCTCCCTCTTGAAAGCTTGGTGGCAATCTCATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGACAAGGTTGGCGCAGGAAACAGGCTTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGAAAAAGGAATTGGCATACGAATCCTTCATCATCTACCCCCTCTAAAAGCAAGCGCAAGAGCAATGCAGGAGAAAGCAGTAACCAGAGCTTCATGTGA 1140 0.5018 MAFHDHLPQELAFQPFTDEQQQLSQNRDMQRMMPFSAGGGPAPTWLVNSGGGPSLRQQNFLHLPSDSSADDVRGSMMPSSERSNDRDGGDQSRGGGGGGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQAQRVLEKYSGLSNGVIDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANIYDGGLDAADTLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKTRLAQETGLQLKQINNWFINQRKRNWHTNPSSSTPSKSKRKSNAGESSNQSFM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1005 379 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677
Acco13g1005 379 MobiDBLite consensus disorder prediction 346 379 - -
Acco13g1005 379 MobiDBLite consensus disorder prediction 14 31 - -
Acco13g1005 379 CDD homeodomain 294 355 IPR001356 GO:0003677
Acco13g1005 379 SMART HOX_1 293 358 IPR001356 GO:0003677
Acco13g1005 379 SMART KNOX2_2 159 214 IPR005541 GO:0003677|GO:0005634
Acco13g1005 379 SMART ELK_2 271 292 IPR005539 GO:0003677
Acco13g1005 379 Pfam ELK domain 271 292 IPR005539 GO:0003677
Acco13g1005 379 Gene3D - 290 368 - -
Acco13g1005 379 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Acco13g1005 379 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
Acco13g1005 379 SUPERFAMILY Homeodomain-like 293 359 IPR009057 -
Acco13g1005 379 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Acco13g1005 379 MobiDBLite consensus disorder prediction 1 102 - -
Acco13g1005 379 MobiDBLite consensus disorder prediction 50 65 - -
Acco13g1005 379 Pfam KNOX1 domain 109 149 IPR005540 GO:0003677|GO:0005634
Acco13g1005 379 FunFam homeobox protein knotted-1-like 3 isoform X1 292 353 - -
Acco13g1005 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 367 - -
Acco13g1005 379 Pfam KNOX2 domain 165 213 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1005 Acco-ChrAcco13 8163048 8166703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1005 1 367 Homeobox Transcription Factor Family AT5G25220 61.520 1.61e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco13g1005 KNOX2 3.9e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g1005 13 8163048 8166703 Acco13g1005 13 8163048 8166703 ECH