Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1001 ATGGCCGGGAATCTCCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTCCATCAGAGTGCAGTCTGGTCCGATTCTCCATCCTCCGTGGCTCCTCATAGTTGTACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAAAGAAGCTTGGTATATCAGGCATACCCACATGAGGTGCTGGGAGGTGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTAGGAACACAGAGGAAAACAGGGATCGAAAGTAAACCGAAGAGCAGAGAGAAGGTGATGAGTGAGGCAGAGTTGCAGATAGAAATATATGGAGCAAAGAAAAATAGAAGCAGGAGATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGATCAAGAGGAATGTGCAGTGTGCTTAGAATCATTCAAAAATGGCGACACACTAATAAATCTTCCATGTGTACACAAGTTCCATTCAAGGTGTTTGGAGCCATGGCTGCAAAATAATTCTCTCTGTCCTTGTTGCAGAACCACTATCATCAATATTTCTCACTAG 567 0.4462 MAGNLPGVECARRRRFHQSAVWSDSPSSVAPHSCTRRSSFCLYTSNHESLSSSSLLQRSLVYQAYPHEVLGGAAREAKQRLDERLGTQRKTGIESKPKSREKVMSEAELQIEIYGAKKNRSRRFSWSKLSWKATDQEECAVCLESFKNGDTLINLPCVHKFHSRCLEPWLQNNSLCPCCRTTIINISH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1001 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Acco13g1001 188 CDD RING-H2_PA-TM-RING 138 180 - -
Acco13g1001 188 Pfam Ring finger domain 138 180 IPR001841 -
Acco13g1001 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 185 IPR013083 -
Acco13g1001 188 PANTHER SI:CH211-59O9.10 134 183 - -
Acco13g1001 188 SMART ring_2 139 179 IPR001841 -
Acco13g1001 188 SUPERFAMILY RING/U-box 125 185 - -
Acco13g1001 188 FunFam Zinc finger family protein 113 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1001 Acco-ChrAcco13 8141778 8142535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1001 1 85 C3H Transcription Factor Family AT2G15580 54.255 2.68e-20 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g1001 13 8141778 8142535 Acco13g1001 13 8141778 8142535 ECH