Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0996 ATGGGTTCGTCCAACAGTAGACTTCGCTCTCGCTCTTCTACCCACCGAGTCAATGGCACTAACCGCTTCAGATTCTCCGCCCTTCTCTGCGGTGGCTCCGCCTCTCGCTCCACTTATGAGATGGAAGATCAATCAACTGAACTTCAGAGAGATTCTGCCACAGAATTTAATGATGAAAATCAGAAAGTTGTTGACGCGTCCTCTGTTCCATGTACAGAAGCTGGAATTGGTAGCAGCCCCCGTACTGAAACTGCAAGCTCATTGGATTCTAGAACTGAGTTGAGTGAGATTTCTACTGTTGAATGTTCCTCGAGAAGTGTTTCAACCAGTGGTCAAATGAAAAACTTGTCTGTAAGCAAGGAGCTACTTCCTCCTCATCAGGTAAGTGCTGATCATTGTTATGATGAATCTTATAGGGATAGTAGCAATGCAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCAATGACGTTGATGGTTCAGTGGATAGTGGTGTTTCTCAAATACCTCGTGAGACAATGTATCTGAGGAGCTCAACCTCACATGAGCAAGGAGATTCCAATGCTGATGGTATTTCTGTTGAGAATCACACTCATTCAGCTGTACCAATCCATAATTCTGAATTGGATCATGTTGCTCAAGTTTCCAATTTACCTGTAACTTCTGAGTTGCCTGAAAATGAAACCCCTCAAGAGACGATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGGCAGGGAAATGACAGTATGTTTCAAGTTGATGTCGTCACAATATCTTCCAATGTTTTGTCTGGTGGCAATACTGATGTCAGTGATCGTGATGCTAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACACTTGTCTTCTCAGCTGGTGACATGGATGATCCAAGTTCTCAAGATCAATGGCTTCTCGATTTGAGTAGTACTTCCCCAAATGATAGGGTTGGAGATGATTCTGGATATTTAGGCAGTAGGATTCACAGATTAAACGAGCGAATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAAATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAATCTTTTCAGACGGCTGAGGAGTCCAGTACTCGTGCAAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCGGAATCAATTGTAGACTCTTTCCCTCTTAAGCGTCACAAAAAGATTGACACAGCTGATAATGGCAATGATGCTGGACAATGTTATATATGCCTGGCCGAGTATGAAGAAGGAGACAAAATACGAGTTCTTCCATGCAACCATGAGTACCACATGTCGTGTGTTGACAAGTGGCTTAAAGAAATACATGGTGTCTGCCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTTATGACTCTAACGCCGCAGAAGTACCATCTCAATGA 1629 0.4371 MGSSNSRLRSRSSTHRVNGTNRFRFSALLCGGSASRSTYEMEDQSTELQRDSATEFNDENQKVVDASSVPCTEAGIGSSPRTETASSLDSRTELSEISTVECSSRSVSTSGQMKNLSVSKELLPPHQVSADHCYDESYRDSSNAASTSFVEQQSSDPVSVNVSANKDAVNDVDGSVDSGVSQIPRETMYLRSSTSHEQGDSNADGISVENHTHSAVPIHNSELDHVAQVSNLPVTSELPENETPQETIPSGLGFLVSNRERGQGNDSMFQVDVVTISSNVLSGGNTDVSDRDARRDSRRLFWDAFSRRSSRRFGDSRTLVFSAGDMDDPSSQDQWLLDLSSTSPNDRVGDDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQTAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKRHKKIDTADNGNDAGQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESYDSNAAEVPSQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0996 542 MobiDBLite consensus disorder prediction 43 58 - -
Acco13g0996 542 SMART ring_2 479 520 IPR001841 -
Acco13g0996 542 MobiDBLite consensus disorder prediction 36 113 - -
Acco13g0996 542 SUPERFAMILY RING/U-box 463 524 - -
Acco13g0996 542 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Acco13g0996 542 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Acco13g0996 542 Pfam Ring finger domain 478 521 IPR001841 -
Acco13g0996 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Acco13g0996 542 MobiDBLite consensus disorder prediction 59 113 - -
Acco13g0996 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 527 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0996 Acco-ChrAcco13 8061576 8065147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0996 390 525 C3H Transcription Factor Family AT5G45290 52.980 6.06e-42 156