Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0992 ATGTTTGCAACAAATAATAATAATATTAATAGTGCATGTGTGCGTGACAGCGTATACATATATAATCGAGTAGGGTTTTCGCTGGGACACGCCCTCTCTCGTCTTCCTCTTGTAAACCTCGGCAGGCCGTCACTTCCTTCGGCAGAGAGAGCCCCAGCAACCATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCCAAAGTGTTTTTGTGCTCCAAGAAATCTGGGAAGGGAAAGAGGCCCGGTAAAGGTGGGAATCGCTTCTGGAAATCTATTGGTCTTGGATTCAAGACCCCCAGGGAGGCCACTGAAGGAACCTATATTGATAAGAAGTGCCCCTTTGCTGGTAATGTTTCTATCCGAGGTCGTATTATAGCTGGCACTTGTCACAGTGCTAAGATGACGAGGACCATTATTGTTAGGCGGAACTATCTTCATTTTGTGAAAAAGTATCAGAGATATGAGAAGAGGCATTCAAATATTCCTGCTCATATATCCCCTTGCTTTCGTGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTCTCAAAGACAGTGAGATTCAATGTGTTGAAGGTGATCCCTGCGGGATCTTCTGGTGGTGTGAAGAAGGCATTCACTGGAGCTTGA 642 0.4548 MFATNNNNINSACVRDSVYIYNRVGFSLGHALSRLPLVNLGRPSLPSAERAPATMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCPFAGNVSIRGRIIAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTGA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0992 213 FunFam 40S ribosomal protein S11 55 212 - -
Acco13g0992 213 SUPERFAMILY Nucleic acid-binding proteins 122 201 IPR012340 -
Acco13g0992 213 PRINTS Ribosomal protein S17 family signature 185 192 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 PRINTS Ribosomal protein S17 family signature 175 185 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 PRINTS Ribosomal protein S17 family signature 142 165 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 Pfam Ribosomal protein S17 128 196 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 ProSitePatterns Ribosomal protein S17 signature. 175 187 IPR019979 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 Pfam Ribosomal_S17 N-terminal 58 126 IPR032440 -
Acco13g0992 213 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 64 203 IPR000266 GO:0003735|GO:0005840|GO:0006412
Acco13g0992 213 Gene3D - 45 212 - -
Acco13g0992 213 NCBIfam 30S ribosomal protein S17 107 197 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0992 Acco-ChrAcco13 8029273 8032112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0992 55 213 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.308 6.52e-95 272