Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0990 ATGGCAAGTAATGGTACTGAGAAGATCCCTATCAATAATGGTACTGAAGGTTCAGAAGCTGCCATTGAGATAAAGATTAAAACTTTGGACTCACAAATTTATACTCTCAAAGTGGATAAACAGATGCCAGTTCCTGCTTTGAAGGAACAGATTGCTTCTGTAACTGGAGTGTTATCAGAGCGGCAGCGCCTAATTTGTCGGGGAAAAGTCCTAAAGGACGATCAACTCCTTTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTCGTTGTGAGGCAACCTGATCTGCCTGGAAGTTTGCCCAATCAATCAGCACCTGACCCACATTCAAGCACAAACAATAGTCACAGTAGTCAAATAGCTCCTGGCGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGGGTTCCTCCAGAAGTTAATAGGATTATTTCTGCTATTCTAGGATCTATTGGAATTTCAAATTTTCCAAGTGGCAGTGAAGGGATTGACGTCAGGGGACATGATTCCCGGGGGCTTGGGAGAACATCAGGTTTTAGTGGTATATCAGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGCAGAATTCATCTGATAGATCACGCAGTGCATTTGGACTTCCAACAGCGGCTTCTTCTTTGGGATCGTTTCAGCCCCCTGTCATTCCTGATTCTTTGACAACTTTGTCTCAGTACGTGAGTCATTTAAGGCATGAATTTGAAGCCATTGTGAGAGAAGGGGAAAATTGCACCCAAGCAGCTGAGGCTCATAGGAATGAAGCATTGATTTCTTCTTCACCTTCAGGCTCTACACCAGAAGGGCTTTTCTCACCTGCATACTTGGCGGAAGTCTTGCATTCCACCAGACGGATGTTCATTGAACAGGCTAACGAGTGCTTATTTCAACTTGCAACACAGCTTGAGAATCAAGCAAATGTAACTGATCCCTTGTTGCGGTCAAACACTCAGTCCAGGGCTTGGAGGACTGGAGTTCTGTTTTACAATCTTGGTGCATTTTTACTCGAGCTTGGTCGTACGACCATGGCATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGCTAATGGCGGGCCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATTATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCTAGCTTTGGTTCTGCCCCTGTTGGAACTGTGCAACCCCCATCTGGCTTAGGTAGTGGACTTGGTTCAAGTTTTTACCCAAGGCGTATAGATATTCAGATACGGCGAGGTACATCAACATCCTCAGCTAATGTCAACAGAGAAGAACATGGGGATACACAATCTACTTCTGCACAAAGAAATCCTGTTGAAATTTCCGTTAATCAGACAAGCTCAAGACTTCCAGAGGATTTATCTTTTGGTGGGGAGTCAGGAGTACGGATAGTGCCAATTAGAACCATGGTTGCAGCAGTACCTAGCCACTTAGGTCGCAACCCTTCAGAATCTTCTGCTAATTCTATAGGGCTTTACTATCCTGTTATTGGGAGATTTCAGCATGCACCTTCTGGACATGGGAATAGTGAATCAGGATCTCAGCCTGCTAGTCAGCATCACACATCTGCTTTTCATGCTGCGCAACAATCAACACCTGAATCTACTGGGCAAAGGCAAAGCATGGATGATCCTGCAAGAAATGGATCTTCATCAATTCCTAGCTTAAGACAAGAGCCATCTAATACCCCCAGGGTGAACATCAATGTTCTGACGGCTGGTGGACTCCAGAGTAACCAAGAATCTGAGAGGCAGATGCCCAATAATGTACTTCAATTTATAAGAGCACTTTTTCCTGGTGGTGAAATTCATGCTGAAGATCCTAGTCCACAGGGAACGACTGGTGCTCCTACCTTAGACCATGCTGGAACATCAACAGGTGCTGCTCATGTCCCCGAGTCAGAACCCAGAGCTAGTGAGGAAGGAATATTTTTGTCTAATTTACTCCGAGAGGTCATGCCCCTCATATCACAAGCAGGGTCTGGGACGCCTGGAACTCCTCAAGGTGAAAATGCTTCAGACAATAAAACAGCTTCTGATTCTTCCTCCCAGGGTGGGACATCACGCAGACAAAGTGATTCTGATCCAAGCCCTCCAAATTCTAAACGCCAAAAGACGGAGTGA 2169 0.4518 MASNGTEKIPINNGTEGSEAAIEIKIKTLDSQIYTLKVDKQMPVPALKEQIASVTGVLSERQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPGSLPNQSAPDPHSSTNNSHSSQIAPGVFIETFNVPVQGDGVPPEVNRIISAILGSIGISNFPSGSEGIDVRGHDSRGLGRTSGFSGISDSFHPQPEQAGLQNSSDRSRSAFGLPTAASSLGSFQPPVIPDSLTTLSQYVSHLRHEFEAIVREGENCTQAAEAHRNEALISSSPSGSTPEGLFSPAYLAEVLHSTRRMFIEQANECLFQLATQLENQANVTDPLLRSNTQSRAWRTGVLFYNLGAFLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPLPFQPGASFGSAPVGTVQPPSGLGSGLGSSFYPRRIDIQIRRGTSTSSANVNREEHGDTQSTSAQRNPVEISVNQTSSRLPEDLSFGGESGVRIVPIRTMVAAVPSHLGRNPSESSANSIGLYYPVIGRFQHAPSGHGNSESGSQPASQHHTSAFHAAQQSTPESTGQRQSMDDPARNGSSSIPSLRQEPSNTPRVNINVLTAGGLQSNQESERQMPNNVLQFIRALFPGGEIHAEDPSPQGTTGAPTLDHAGTSTGAAHVPESEPRASEEGIFLSNLLREVMPLISQAGSGTPGTPQGENASDNKTASDSSSQGGTSRRQSDSDPSPPNSKRQKTE 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0990 722 SUPERFAMILY Ubiquitin-like 18 109 IPR029071 -
Acco13g0990 722 MobiDBLite consensus disorder prediction 172 207 - -
Acco13g0990 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Acco13g0990 722 MobiDBLite consensus disorder prediction 427 473 - -
Acco13g0990 722 CDD Ubl_ubiquitin_like 24 91 - -
Acco13g0990 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Acco13g0990 722 MobiDBLite consensus disorder prediction 427 468 - -
Acco13g0990 722 Gene3D - 15 117 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 520 579 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 98 119 - -
Acco13g0990 722 FunFam Large proline-rich protein BAG6 14 107 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 617 654 - -
Acco13g0990 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 721 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 179 207 - -
Acco13g0990 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Acco13g0990 722 MobiDBLite consensus disorder prediction 674 714 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 670 722 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 94 119 - -
Acco13g0990 722 MobiDBLite consensus disorder prediction 518 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0990 Acco-ChrAcco13 8015302 8022200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0990 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 2.65e-08 51.2