Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0939 ATGGAGAAGAAGTGTGGGTGCTGGGCTGTTCTGAAACGCGGCGTTAGAGGTGCGTGCAAACCCTCAGCTCCTAGAGACTCTGCTTCCACTATTCCTCGTTCTAGTCTCGTTTATGATGCAGCAACTGAGACACGTTACCTGAATGCTAGTAATCGAGAGTTATGTCCTCCCAATGATGCTCAACTATCTTATGATAATACTGTACCTGCACCTGAGGAAAACAGGGCTCCTTGCCAGCTTCTTCAATTTTCTTTTCAGGAATTAAAAGCTGCAACTGGAAATTTCAGACCTGACAGCATTCTTGGGGAAGGTGGGTTTGGCTTTGTGTTCAAGGGATGGATAGAAGAAAATGGGACAGCCCCGGCGAAACCAGGTTCAGGGGTTACAGTGGCTGTTAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGTTAGTAAAATATCTGCTTTGTTTGGGTTAGCTGAAGTTGACTTCCTCGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGCTACTGTATTGAAGATGATCAGCGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGCTTGGAAAATCATCTTTTCAGAAGAACTGTACCTCTTCCATGGTCCAATAGGGTAAAGATTGCACTTGGTGCAGCTAAAGGGTTGGCCTTCCTCCATAGTGGTCCAGAACCAGTCATTTATAGAGATTTCAAAACATCAAACATTTTGCTTGATTCGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTCGCTAAAGCAGGGCCTCAAGGAGACAAGACACATGTCTCTACCAGAGTTGTTGGAACTTATGGTTATGCTGCTCCTGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTATTACTTGAGATTTTAACAGGGAGAAGATCTATGGACAAGAAGCGCCCTAGTGGGGAACAAAATCTGGTATCATGGGCTCGGCCATATTTAGCCGACAAGCGAAAGCTATACCAACTTGTGGATCCTCGCTTGGAACTAAACTATTCTCTCAAAGGGGTGCAGAAAATTTCTCAGTTAGCTTATAATTGCCTCAATAGGGACCCCAAATGCCGTCCAAACATGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTCAATGATCTCGCGATCTTATCTTACCACTCTCGTTCATTGTCTCAACAAGGGAGAAGAAAAAAGAAAGCAGATGGAACTCCACATCCACAGCTTGCCTACACACAATCCAAGAGCATCAAGGGTACTTCACCCTTGAACACCAGCAAGCATCATCGATGA 1329 0.4447 MEKKCGCWAVLKRGVRGACKPSAPRDSASTIPRSSLVYDAATETRYLNASNRELCPPNDAQLSYDNTVPAPEENRAPCQLLQFSFQELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGVTVAVKSLKPDGLQGHREWVVSKISALFGLAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHSGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLNRDPKCRPNMDEVVKALTPLQDLNDLAILSYHSRSLSQQGRRKKKADGTPHPQLAYTQSKSIKGTSPLNTSKHHR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0939 442 CDD STKc_IRAK 101 387 - -
Acco13g0939 442 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Acco13g0939 442 Gene3D Phosphorylase Kinase; domain 1 71 190 - -
Acco13g0939 442 Gene3D Transferase(Phosphotransferase) domain 1 191 401 - -
Acco13g0939 442 SUPERFAMILY Protein kinase-like (PK-like) 78 391 IPR011009 -
Acco13g0939 442 MobiDBLite consensus disorder prediction 419 435 - -
Acco13g0939 442 Pfam Protein tyrosine and serine/threonine kinase 99 384 IPR001245 GO:0004672|GO:0006468
Acco13g0939 442 PANTHER OS01G0588500 PROTEIN-RELATED 77 388 - -
Acco13g0939 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Acco13g0939 442 ProSiteProfiles Protein kinase domain profile. 95 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g0939 442 FunFam Probable serine/threonine-protein kinase PBL8 191 404 - -
Acco13g0939 442 FunFam Serine/threonine-protein kinase BIK1 64 190 - -
Acco13g0939 442 MobiDBLite consensus disorder prediction 401 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0939 Acco-ChrAcco13 7436976 7439752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0939 83 384 Glycoside Hydrolase AT3G07070 54.575 4.67e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco13g0939 PK_Tyr_Ser-Thr 5.5e-46 CL0016