Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0936 ATGGACCTTCAACTAGGCCTCTCACTCCCCTCCTTTCGTTCTCATGAAGATGATGATCTCTTCACTTCATTCACTCTCTCTCACAAGAAACGAAGTTTCAGCGATCTCCTCCTTCATCACCATCCAAAACTCAGCCAAGAAGAAGACAAGGTTTTGCTGCCCATCACTCTGCCTCTCCTTCCCTTAACACCTTCCCTTGATGCAGACCTTGACGAAAACGACCTCCGTACCAGCTCCTCCATTGTCACGAAGATGGAGGGAGAAGGAATTGGGCGAAAGATTGATCTTAGCTTGCATCACTCTTTTCAGAAGCTGAAGCAAACCTTGATCGCCATGTTTGGAAAATGGAATGACCATTCAGACAGCTATGAATTAGCTTATCAGGACAGAGAAGGAGACTGGTTGCTTGCAGAGGATCTGCCATGGAAAAACTTCCTTCAGTGTGCTCAACGTCTCAAATTGGTGAAGAGAAAGGCCTAA 480 0.4625 MDLQLGLSLPSFRSHEDDDLFTSFTLSHKKRSFSDLLLHHHPKLSQEEDKVLLPITLPLLPLTPSLDADLDENDLRTSSSIVTKMEGEGIGRKIDLSLHHSFQKLKQTLIAMFGKWNDHSDSYELAYQDREGDWLLAEDLPWKNFLQCAQRLKLVKRKA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0936 159 Gene3D - 81 159 - -
Acco13g0936 159 Pfam AUX/IAA family 120 157 IPR033389 -
Acco13g0936 159 Pfam AUX/IAA family 74 115 IPR033389 -
Acco13g0936 159 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 81 158 IPR003311 GO:0005634|GO:0006355
Acco13g0936 159 SUPERFAMILY CAD & PB1 domains 78 154 - -
Acco13g0936 159 ProSiteProfiles PB1 domain profile. 78 159 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0936 Acco-ChrAcco13 7366890 7368034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0936 60 155 B3 DNA Binding Superfamily AT5G20730 29.464 2.20e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco13g0936 AUX_IAA 4.4e-09 CL0072