Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0912 ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGACAACGTCACTGGGGCTCATGGGTCTCCGAAATTCGCCACCCTCTCCTGAAGAGGAGGGTGTGGCTTGGGACCTTTGACACGGCGGAAGAAGCGGCGAGAGCATACGATCAAGCTGCCATTTTGATGAGTGGACGGAATGCGAAGACGAATTTCCCGATATCCCAGACACCGGAGGGCGATCCTAAGGGGGCGGCCACTGATCATAATAACAACAAGGCGGCGAGGGATCTGGAGGAGATTCTACACGCGAAGCTGAGGAAATGTGGGAAGCTGCCGTCGCCGTCGATGACGTGCCTAAGGCTGGACACGGAGAACTCCAACATCGGAGTGTGGCAGAAACGCGCGGGCCATCGTACGGATAACTCCAACTGGGTTATGACAGTCGAACTGGGAAAGAAGACCAACAACGGTAACAACAGTAATAGTGGGTCAGAGAAAACGACGAGGAGGAATGAACGAAGAAGAAAGGATTGCACTGCAAATGATCGAAGAACTTCTTAA 534 0.5262 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDQAAILMSGRNAKTNFPISQTPEGDPKGAATDHNNNKAARDLEEILHAKLRKCGKLPSPSMTCLRLDTENSNIGVWQKRAGHRTDNSNWVMTVELGKKTNNGNNSNSGSEKTTRRNERRRKDCTANDRRTS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0912 177 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Acco13g0912 177 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Acco13g0912 177 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Acco13g0912 177 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Acco13g0912 177 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Acco13g0912 177 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Acco13g0912 177 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Acco13g0912 177 MobiDBLite consensus disorder prediction 157 177 - -
Acco13g0912 177 MobiDBLite consensus disorder prediction 141 177 - -
Acco13g0912 177 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Acco13g0912 177 MobiDBLite consensus disorder prediction 141 156 - -
Acco13g0912 177 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 147 - -
Acco13g0912 177 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0912 Acco-ChrAcco13 7035330 7036129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0912 1 156 AP2-EREBP Transcription Factor Family AT1G15360 62.346 1.15e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco13g0912 AP2 1.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0912 13 7035330 7036129 Acco10g1999 10 32607329 32608009 ECH
Acco13g0912 13 7035330 7036129 Acco13g0912 13 7035330 7036129 ECH