Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0898 ATGAGTTTTCCTGATCATCACTCTGGCTTTATGCTACCGCCGATACCGTTTACGGCGGATGACGATTCCAATGGAAGATGGCCACAATTCCCAATTAACAATGAACTATTCGATTCACATTCAACATTTGATCAGCTTCCTCCACTCAAGAGGCCCAGAACATCCGAAAGCAATCACTTCGACCCCTCGCCATTCCCGCCGGCGCCGGCGCCGCCCATGAATTCCAGGATGCAGAATCCACAAAATACTCCAACAAACAGAGGAGGAACGAGCCACATTTTTTATAAGACTCGATTGTGTGCGAAATTCAGAATGGGTACCTGTAGGAACGGCGAGAGTTGCAATTTTGCTCATGGCAATGAGGACATGAGGCAGCCACCTGCAAATTGGCCGGAGCTTGTAGGTTTACGCGATGAAGAAAGGTCATCTGGAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTATGGTGAAAGGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGAGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAATTCGCACTTGAATGGCCCTAATAATTCAGACAATAATAAGAATGTCAACAATGGGTGTGATGGTTTTAGGACAAACGGAAAGGCTCCTTTCTGGAAGACTAAGTTATGTAGCAAGTGGGAGATAACAGGACAGTGCCCTTTCGGTGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGGCTGGTGGACGCAGTGAAGCAGAAACTATAGTAGCTGCATCAATTCCTGTGAATGATGTATCTCCTATCAACGCTGTAAGTATAGTTGATTCACAGGAAGATGAACAAAAAAAGAAGAATTTGCTGAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGGTGATTGGCTTGATGACCTTCCATTGCCAAGATGGTCAATTGGATCCTAA 1017 0.4444 MSFPDHHSGFMLPPIPFTADDDSNGRWPQFPINNELFDSHSTFDQLPPLKRPRTSESNHFDPSPFPPAPAPPMNSRMQNPQNTPTNRGGTSHIFYKTRLCAKFRMGTCRNGESCNFAHGNEDMRQPPANWPELVGLRDEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPNSHLNGPNNSDNNKNVNNGCDGFRTNGKAPFWKTKLCSKWEITGQCPFGDKCHFAHGQAELQVAGGRSEAETIVAASIPVNDVSPINAVSIVDSQEDEQKKKNLLKWKINKKVNRIYGDWLDDLPLPRWSIGS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0898 338 SUPERFAMILY CCCH zinc finger 153 180 IPR036855 GO:0046872
Acco13g0898 338 MobiDBLite consensus disorder prediction 75 90 - -
Acco13g0898 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 178 IPR000571 GO:0046872
Acco13g0898 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Acco13g0898 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 263 IPR000571 GO:0046872
Acco13g0898 338 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Acco13g0898 338 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Acco13g0898 338 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Acco13g0898 338 SUPERFAMILY CCCH zinc finger 235 267 IPR036855 GO:0046872
Acco13g0898 338 PANTHER CCCH ZINC FINGER/TIS11-RELATED 54 184 IPR045877 GO:0003729
Acco13g0898 338 FunFam Zinc finger CCCH domain-containing protein 89 125 - -
Acco13g0898 338 SUPERFAMILY CCCH zinc finger 92 125 IPR036855 GO:0046872
Acco13g0898 338 FunFam Zinc finger CCCH domain-containing protein 39 150 182 - -
Acco13g0898 338 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Acco13g0898 338 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Acco13g0898 338 Gene3D - 89 125 - -
Acco13g0898 338 Gene3D - 230 269 - -
Acco13g0898 338 Gene3D - 150 186 - -
Acco13g0898 338 FunFam Zinc finger CCCH domain-containing protein 231 268 - -
Acco13g0898 338 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Acco13g0898 338 MobiDBLite consensus disorder prediction 38 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0898 Acco-ChrAcco13 6905616 6907730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0898 236 267 C3H Transcription Factor Family AT1G68200 59.375 1.22e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco13g0898 zf-CCCH 2e-11 CL0537