Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0875 ATGGATAAGAAAAAAGTGGCGGTTCCGCTTGTCTGCCACGGCCATTCCCGGCCTGTAGTGGATCTTTTTTACAGTCCTGTTACGCCCGATGGATTCTTCCTCATCAGTGCAAGCAAGGATTATAGTCCTATGCTCAGAAATGGAGAGACAGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGTGCTGCTACTGCCTCGGCTGATTTCTCATCGAAAGTTTGGGATGCTTTGACAGGAGTTGAATTACACTCGTTTGAACACAAGCACATTGTTCGTGCATGTGCTTTTTCTGAGGACACTCACCTTTTACTCACTGGGGGAGTAGAGAAAATTCTCCGAATCTATGACTTGAACCGTCCTGATGCACCGCCGCGAGAAGTTGACAAGTCCCCTGGTTCCATCAGAACTGTTACATGGCTTCATAGTGACCAGACAATATTAAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGACATGAGAAGTGGTCAAATAGTCCAGACACTTGAGACCAAGTCCTCTGTGACCAGTGCTGAAGTGAGTCAGGATGGTCGTTACATTGTAACTGCAGATGGTTCTGCAGTTAAATTTTGGGATGCGAATCACTATGGGCTGGTGAAGAGTTATGGTATGCCTTGCACTGTTGAATCAGCTTCGTTGGAACCCAAGTACGGTAATAAATTTGTTGCTGGGGGAGAAGACATGTGGGTTCGAGTTTTTGATTTCCACACTGGCCATGAGATTGCGTGCAACAAGGGGCACCATGGTCCTGTGCACTGTGTGCGTTTCTCTCCTGGGGGTGAATCTTATGCCTCAGGATCTGAGGACGGAACCATAAGAATATGGCAAACTGGTCTTTTGACCAATGATGAGTCGGAGTTGATATCTGCAAATGGATCAGTTGCACAGGTTAAGGTTAATGCGGATGAGGTTTCACGCAAGATTGAGGGTTTTCATATTGCAGATGATGGGAAATCCAAAGAAAAGGAAGAGGCAGGGGAGGAATAA 1053 0.4615 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDYSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGVELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDLNRPDAPPREVDKSPGSIRTVTWLHSDQTILSSCTDMGGVRLWDMRSGQIVQTLETKSSVTSAEVSQDGRYIVTADGSAVKFWDANHYGLVKSYGMPCTVESASLEPKYGNKFVAGGEDMWVRVFDFHTGHEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGLLTNDESELISANGSVAQVKVNADEVSRKIEGFHIADDGKSKEKEEAGEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0875 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Acco13g0875 350 SMART WD40_4 50 89 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Acco13g0875 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Acco13g0875 350 Gene3D - 9 320 IPR015943 GO:0005515
Acco13g0875 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Acco13g0875 350 Pfam WD domain, G-beta repeat 95 130 IPR001680 GO:0005515
Acco13g0875 350 Pfam WD domain, G-beta repeat 178 214 IPR001680 GO:0005515
Acco13g0875 350 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Acco13g0875 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Acco13g0875 350 CDD WD40 14 298 - -
Acco13g0875 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 341 - -
Acco13g0875 350 FunFam Serine-threonine kinase receptor-associated protein 8 323 - -
Acco13g0875 350 SUPERFAMILY WD40 repeat-like 5 298 IPR036322 GO:0005515
Acco13g0875 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Acco13g0875 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0875 Acco-ChrAcco13 6715858 6718942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0875 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 27.914 1.60e-38 139