Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0869 ATGACCATTGACGACGAGAGCTCCATATACGTTGGCGGTCTTCCCATCGATGCCACCGAAGATACGATCCGCAGCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGATGTTCGGAATAGAGGAAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCAGTTGATGCAATCAATGACATGAATGGAAGGACCATTAGTGGGCACGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGATCACATTTTGGTGGAGAACCTATTGGTCATGATACTGATAGGAATGGAGACTGGGATCATGGTAGAGATCGCGCCCGAGATTATAATCATGACAGGGACAGGCACAATAATAGATATAGTGATTGGTCTCGAGAGCGTGATAGATCACGGGAGCATGATAGATCTCGAAACTTTGAGCATGAAGGGGATAGACGATATGAGCATGAACATTATCATGATAAAGAAAGAGAACCTTTGCATATTAAAGATCGGGGTGAAGAGAGATATCAGGCTGATGATGAACAAGAACACAATGAAGTATTTGATCAAGCTACACTAAAAGACTATGACCTAGATTATGATACAGACAGGAAGATGGACAGGACTTATGATCATGACCGAAGTTTTGATGGGGATAGAAATGAACTCTCAAAGAGAAACTATGGATTAAATGTTACGAAACAACATAACATGGATTTTTCATCAGACTCAAATGGTAACCTCAATGACGAGGTTGCAGATGAATTAGAGAGGTCAACTCAAAGGCTTGGTCAACTGAAAAAAGAGGTCTCTCAGTTGGAAGAGAAGTTACAAGAGAGACGACAACTCGTTTCAGATTTACAAAAGCAATCTAGGAAACTGGAGGATGCATTAGTTAATGCAAAGAAATATTCTTCATATCGTCAGGTGCAGTTGGCCAAGGTACACGAATGTTTTCTGCAACTGAAAGATTACTCAGAGCGATTAAAAACCGGTGAAAAAGAACTTCAGAGTCTGGTTGATACGATAAGGTTAGAGAGTGATGGTGATGGAGAAGATGTGGCTTAA 1071 0.409 MTIDDESSIYVGGLPIDATEDTIRSVFDLYGAILDVKIINDVRNRGKCYCFVTFTNPRSAVDAINDMNGRTISGHVVKVNGVRTRGGRSHFGGEPIGHDTDRNGDWDHGRDRARDYNHDRDRHNNRYSDWSRERDRSREHDRSRNFEHEGDRRYEHEHYHDKEREPLHIKDRGEERYQADDEQEHNEVFDQATLKDYDLDYDTDRKMDRTYDHDRSFDGDRNELSKRNYGLNVTKQHNMDFSSDSNGNLNDEVADELERSTQRLGQLKKEVSQLEEKLQERRQLVSDLQKQSRKLEDALVNAKKYSSYRQVQLAKVHECFLQLKDYSERLKTGEKELQSLVDTIRLESDGDGEDVA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0869 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Acco13g0869 356 SMART rrm1_1 8 80 IPR000504 GO:0003723
Acco13g0869 356 CDD RRM_SF 9 80 - -
Acco13g0869 356 Gene3D - 2 97 IPR012677 -
Acco13g0869 356 Coils Coil 250 305 - -
Acco13g0869 356 MobiDBLite consensus disorder prediction 83 187 - -
Acco13g0869 356 PANTHER GEO13361P1-RELATED 6 160 - -
Acco13g0869 356 Coils Coil 323 343 - -
Acco13g0869 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Acco13g0869 356 MobiDBLite consensus disorder prediction 92 187 - -
Acco13g0869 356 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0869 Acco-ChrAcco13 6668868 6672208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0869 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 31.169 3.94e-07 50.1