Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0855 ATGTCGTCATCAAGTGAAATCGTTTGGAGCTATGAAGAAGAAAAGACCTTTGAGAATGCCATCGCAATGCATGGGGTTGAAGAAGAGTCAGAAGAACAATGGGAGAAGATTGCATCAGCTGTACCCAGCAAAAGCATGGAAGAATTGAAGCAACATTACAAATTGTTACTAGAAGATGTAAGTGCAATAGAGGCAGGCCATATTCCACTTCCAAACTATACTGGTGGTGGAGAAGAAGCTACTTCTTCAAGCAAGGAATTGCATGCTCCTTCTTCCAAAGTTTCCACCTCAGAAAAAAGATCTAATTGCAATTTCAGAACTGGGCTTTCTGGGTTGGGACTTGAATCTTCTGGCCATACTGCTAAAGGAGGCTCCTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGAATTCCCTGGACAGAAGAAGAGCATAGGCTATTTCTACTTGGTCTTGACAAATTTGGGAAGGGAGATTGGAGGAGCATATCAAGGAACTTTGTGATGTCAAGGACTCCAACTCAAGTGGCAAGTCATGCACAGAAGTACTTTATAAGGTTGAATTCCATGAACAGAGATAGGAGGAGGTCAAGCATTCATGACATAACAAGTGTGAACAATGGGGATGTGGCTAATAACCAGACACCAATAACAGGGCAACACACAAACACAAACCCATCAAGCACAATGGGTGTAGGACAGTCTGTGAAACATAGGGCTCATCAACCCCATATACCTGCTGGTATTGGCATGTATGGGGCACCATTAGGGCACCCTGTGGCTGCTGCTCCTGGTCATATGGCTTCTGCTGTAGGAACCCCTGTTATGATGCCTCCTGGACCCCATCCTCATCCTCCTTATGTTGTTCCAATGGCTTACCCTATGGCATCTCCAACAATGCACAGATGA 906 0.4459 MSSSSEIVWSYEEEKTFENAIAMHGVEEESEEQWEKIASAVPSKSMEELKQHYKLLLEDVSAIEAGHIPLPNYTGGGEEATSSSKELHAPSSKVSTSEKRSNCNFRTGLSGLGLESSGHTAKGGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQTPITGQHTNTNPSSTMGVGQSVKHRAHQPHIPAGIGMYGAPLGHPVAAAPGHMASAVGTPVMMPPGPHPHPPYVVPMAYPMASPTMHR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0855 301 CDD SANT 9 57 IPR001005 -
Acco13g0855 301 Gene3D - 1 70 - -
Acco13g0855 301 PANTHER TRANSCRIPTION FACTOR KUA1 5 296 - -
Acco13g0855 301 MobiDBLite consensus disorder prediction 73 136 - -
Acco13g0855 301 MobiDBLite consensus disorder prediction 203 232 - -
Acco13g0855 301 CDD SANT 138 183 IPR001005 -
Acco13g0855 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Acco13g0855 301 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Acco13g0855 301 SUPERFAMILY Homeodomain-like 133 188 IPR009057 -
Acco13g0855 301 ProSiteProfiles SANT domain profile. 4 61 IPR017884 -
Acco13g0855 301 FunFam transcription factor MYB1R1 137 188 - -
Acco13g0855 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 185 IPR006447 GO:0003677
Acco13g0855 301 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Acco13g0855 301 MobiDBLite consensus disorder prediction 76 125 - -
Acco13g0855 301 FunFam Transcription factor SRM1 1 70 - -
Acco13g0855 301 SMART sant 5 59 IPR001005 -
Acco13g0855 301 SMART sant 135 185 IPR001005 -
Acco13g0855 301 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Acco13g0855 301 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Acco13g0855 301 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Acco13g0855 301 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Acco13g0855 301 Gene3D - 137 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0855 Acco-ChrAcco13 6506135 6507259 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco13g0855 Myb_DNA-binding 2.8e-08 CL0123