Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0844 ATGGATCAGCCCCCATCCTCTGCCGGTAGACGCAGCTTGAAGCGCAATCGCAAACAAGAAGTCGCGGAAGAAGGAGCAGTTCATCCTAGGGCCGATGGTAAGGTGTTGGCTCTCGAACCTCGACAGTCTCATCAAGATCTCTTGAGTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCTCAGTCGGATCGCCTCGCGGCCAAGCGCTCTGCTCATCTTCTCTCTGAACTCGCCGAGAATGAGTTAATTGGGGACAGTATAGTAGAGTGCGGAGCCGTACCTGCTTTGTTAAAACATCTGAAAGCTCCAGAACCAGGTGTCGCCAAGCCTTACGAGCATGAGGTGGAAGAAGGATGCGTCTTGGTCCTTGCCCTTCTTGCTAAGAAACCACAGCACCAACAACTCATTGTGGGTGCTGGAGCTTTGGCATATCTTATTGATTTGTTGAAGAGGCACAAGACCTGTGGCAATTCACCAGCACTTACTGGACTTCTAAGGAGCGCAGCTAATGCCATCAAAAACCTTACGGCCGGAAATAGCAGCATTAAAACCCGTGTTGGGATGGAAGGCGGCATCCGTCCTCTTGTTGAATTGTTTGAATTTGATGATGCAAAGCTACAAAGTGCAGCTGCAGGAGCCTTGTCTAGTCTTGCATATAAAAATAATGAGAACAAAAAGCAGATTCTCGAATTGAATGCACTGCCTAAGCTTGTACTAATGCTTGGATCAGAGGATGCTACAATACATTGTGAAGCAGTTTGCGTGATTGCAATGCTGGTCTGTTATTCTCCAAAGATGACAACCAAAGTTCTTCTTGCTGGTTCTCTGCAACCAGTAATTATATTGCTTAGATCTTGCTGTTTCGAGTGTCAAAGAGAAGCACTTCGTGTAGTTGCTATAATTGCAAGGATAGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCCGCCACTGATTGACATGCTTAAGTCTCCACATGCAGAGATTCGAGAACTGTCAGGTTTTGCAATTGCAGTACTTGCTAAGGACCCACACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAACCCTTACTCGACCTTCTTTCCTCCAAGAAAAAAACTGTCCAACATAATACAACCTTATGTGTGTACCGTCTTGCTAAAAATGAGGACAATGTTTCGGATATCATAAAGTTTGGCGGTGTTCAAAAACTCTTGGATAGAGATTTCACAGCTAAAACTGCTAAAAGGTTTGTAGGAAATACAATGGAACTATTAGAGAAAAAAATGCATGGAGGGGTGCTGCAAAAGCTGTTGTATCTTATGCGTTTTGGAGGAAAGAATGTTCAAAGGCACGTGGTTGTGGCTCTGGCTCATTTATGTTCCCCTGATAATGAGAAATTTATTTTTGTTGACAACAATGGACTGGCCTTCTTGCTAGATCTTCTAACATCTACAAACCTCAATGAAAAACGCGAGGCTTCAATGGCACTTCACTCTTTGGCTATTAGAAGCAGATCTATCTCTCCCTTAGATACTACTCCTTTGTCCACGACTCCTCAGTTATACTTAAGCGAGCAATATATAAACAATCCTGCGCTTTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCATCGAATTTCTTTGATTCCATCCTCTGATGCGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGATGCGAAAGATATACCGATTCCAAACATTAAATGGGCTGTCTTTGAATTGATGATGAGATTTATTTATACGGGGACTGTAGATGTCAATTTGGATCTTGCTCAGGATCTCCTGAGAGCCGCTGATCAGTATCTCTTGGACGGTCTTAAGCGATCCTGTGAATGTGTAATAGCTCAGGATATTTCCTCGGGAAATGTTTCTCAATTGTATGAGTTATCAGAGTCAATCAATGCCACGTCATTGAAGCGAGCATGTATATTGTTTTTGTTGGAGCAATTTGACAAATTGAGTGTCAAACCATGGTATAACCGCCTGATGCAACACATCGCCCCAGATGTACTCGAATTCTTCAGAAGGTTACTTGCCAGTGGAATAGAGAAGAAGTAA 2109 0.4329 MDQPPSSAGRRSLKRNRKQEVAEEGAVHPRADGKVLALEPRQSHQDLLSEVVAQVTILNSSLSSSQSDRLAAKRSAHLLSELAENELIGDSIVECGAVPALLKHLKAPEPGVAKPYEHEVEEGCVLVLALLAKKPQHQQLIVGAGALAYLIDLLKRHKTCGNSPALTGLLRSAANAIKNLTAGNSSIKTRVGMEGGIRPLVELFEFDDAKLQSAAAGALSSLAYKNNENKKQILELNALPKLVLMLGSEDATIHCEAVCVIAMLVCYSPKMTTKVLLAGSLQPVIILLRSCCFECQREALRVVAIIARIDSDCKVHIAQRGAIPPLIDMLKSPHAEIRELSGFAIAVLAKDPHNQVGIAYNGGIEPLLDLLSSKKKTVQHNTTLCVYRLAKNEDNVSDIIKFGGVQKLLDRDFTAKTAKRFVGNTMELLEKKMHGGVLQKLLYLMRFGGKNVQRHVVVALAHLCSPDNEKFIFVDNNGLAFLLDLLTSTNLNEKREASMALHSLAIRSRSISPLDTTPLSTTPQLYLSEQYINNPALSDVTFLVEGKRFYAHRISLIPSSDAFRAMLDGVYREKDAKDIPIPNIKWAVFELMMRFIYTGTVDVNLDLAQDLLRAADQYLLDGLKRSCECVIAQDISSGNVSQLYELSESINATSLKRACILFLLEQFDKLSVKPWYNRLMQHIAPDVLEFFRRLLASGIEKK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0844 702 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Acco13g0844 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Acco13g0844 702 SUPERFAMILY ARM repeat 56 409 IPR016024 -
Acco13g0844 702 Pfam Armadillo/beta-catenin-like repeat 191 223 IPR000225 GO:0005515
Acco13g0844 702 Pfam Armadillo/beta-catenin-like repeat 226 261 IPR000225 GO:0005515
Acco13g0844 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Acco13g0844 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Acco13g0844 702 MobiDBLite consensus disorder prediction 13 34 - -
Acco13g0844 702 Gene3D - 42 207 IPR011989 -
Acco13g0844 702 SMART BTB_4 538 635 IPR000210 GO:0005515
Acco13g0844 702 MobiDBLite consensus disorder prediction 1 34 - -
Acco13g0844 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 697 IPR044282 -
Acco13g0844 702 Gene3D Potassium Channel Kv1.1; Chain A 528 672 IPR011333 -
Acco13g0844 702 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Acco13g0844 702 SUPERFAMILY ARM repeat 429 509 IPR016024 -
Acco13g0844 702 Gene3D - 208 411 IPR011989 -
Acco13g0844 702 Gene3D - 414 514 IPR011989 -
Acco13g0844 702 SUPERFAMILY POZ domain 529 631 IPR011333 -
Acco13g0844 702 SMART arm_5 184 224 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 310 350 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 226 266 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 268 308 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 134 182 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 351 391 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 85 133 IPR000225 GO:0005515
Acco13g0844 702 SMART arm_5 465 506 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0844 Acco-ChrAcco13 6415699 6420837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0844 314 409 U-box Gene Family AT5G40140 38.542 1.09e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco13g0844 BTB 2.7e-22 CL0033