Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0827 ATGGGGAGCGATAGTGAAGCCGAAAAGTCGGCGCAGAAGGAGAAGGAAAAGAAGAAGATGCTAGGCCTGTCTCCGATTGCCAAGCCTCTGGCTGGGAAGAAGCTCTGCAAGCGTACTCTTAAACTTGTTCGTCGAGCTTCTGAACACAAGTGCTTAAAGAGAGGAGTAAAGGAAGTGGTCAAAAGTATAAGGCGTGGTCATAAAGGGTTATGTGTTATAGCTGGCAATATATCTCCAATTGATGTGATCACTCATCTTCCTATCTTATGTGAGGAATCTGAAATCCCATACATATATGTCCCCTCGAAAGAAGACCTTGCAAGTGCAGGAGTGACCAAGAGGCCAACTTGTTGCGTTTTAGTGATGACCAAGCCTGCTAAGGGGGAATTAGATAAAGGGGAACAAGAAAAATTAAAGTCTGATTACGATCAAGTTGTATCAGAAGTTAACGAAGTTACTACTTCTCTTTTTTGA 474 0.4304 MGSDSEAEKSAQKEKEKKKMLGLSPIAKPLAGKKLCKRTLKLVRRASEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHLPILCEESEIPYIYVPSKEDLASAGVTKRPTCCVLVMTKPAKGELDKGEQEKLKSDYDQVVSEVNEVTTSLF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0827 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 9 147 - -
Acco13g0827 157 MobiDBLite consensus disorder prediction 1 20 - -
Acco13g0827 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Acco13g0827 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Acco13g0827 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Acco13g0827 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Acco13g0827 157 Gene3D - 17 153 IPR029064 -
Acco13g0827 157 FunFam H/ACA ribonucleoprotein complex subunit NHP2 20 152 - -
Acco13g0827 157 SUPERFAMILY L30e-like 21 131 IPR029064 -
Acco13g0827 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 123 IPR004038 -
Acco13g0827 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Acco13g0827 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Acco13g0827 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Acco13g0827 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0827 Acco-ChrAcco13 6275821 6277600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0827 52 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 32.877 4.21e-07 46.2