Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0824 ATGGACTATGGTGGTGGCTATCCCAGTAATTGGGTACGCTTCTGTGACTCTTGCAGAACCTCTGCTTCCACTCTTTACTGTCACACCGATTCAGCGTACCTCTGTTCTTCCTGCGATGGACAAATTCACGCGCTGGGGTCTCCTGGTTGGCCCCATCATCGTGTGAAACTTTGCAGCTCATGTGAGGACACCCCGGTGGCTTTCACCTGCAAGGCCGATGATGCTTCGCTGTGTGTCAACTGTGACTTTGAAATTCACTCTGCTAACCCAATCGCTAGCCGACACAACAGGGTCCCTGTTTCTCCCCTGCCTCATATACTCAGCGACAACGTAGAAACTCCGGACAACCAGCCTAATTGCGAGGTAATCGAAAACAGAAACAAGATGAGCAGCAAGGAAATGGACGAACGAGAAGCAGACTCGTGGTTACTGCTTGGTTCTGCTGATACTCTGGACAGCCAGGTTGGTGATGGGTTTATGTTCGGAGAAACAGAGGATGATCACCATGCGTACGTGGGGCTCGTTGAAGAGTGTGATTCATCCACAAAGTTCACAAATTTCCAGAAATATCCTGAGCAGGGGCAACAAACTTACAGCTCCTCTGAAGAGATGAACGAAAGTGACAGTGTTGTGCCAGTTCAATCGGTTGAAGCTGATCAGCCTAAGCAATTGCAGCCTCCTCAGCAGCAGCAGCAGAACATCTACTTCAATATGGAGCAAAATCCATCATCAAGAGTTGCTTTCACTAATTACGCCTCGAATTGCCGGAGCGTAGCTGTTCCATATATGGTTGCTCAAATGCTGCAGAGAGGGACGATGAATGAGACGCCAGGGTACAGATTTCCCCAAGGGACAGAGATATTTCCAAGTGCTTCGTCAGTTCCAATGCAAATCCACTTTGGGCAGATGAACAGGAAAGCTGGAGTGGAAAAATACAGAGAGAAGAAGAAATCTAGAAAGTTCGAGAAGAGAATCAGATATGCTTACAGGAAAGCCTACGCTGAGAAACGACCCAGAGTTAGGGGTAGATTTGTTAAGAGACAAGATTTAACCTCAGATGAAGTTGTGCCTCTCCACTGA 1080 0.4787 MDYGGGYPSNWVRFCDSCRTSASTLYCHTDSAYLCSSCDGQIHALGSPGWPHHRVKLCSSCEDTPVAFTCKADDASLCVNCDFEIHSANPIASRHNRVPVSPLPHILSDNVETPDNQPNCEVIENRNKMSSKEMDEREADSWLLLGSADTLDSQVGDGFMFGETEDDHHAYVGLVEECDSSTKFTNFQKYPEQGQQTYSSSEEMNESDSVVPVQSVEADQPKQLQPPQQQQQNIYFNMEQNPSSRVAFTNYASNCRSVAVPYMVAQMLQRGTMNETPGYRFPQGTEIFPSASSVPMQIHFGQMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVRGRFVKRQDLTSDEVVPLH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0824 359 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Acco13g0824 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 349 IPR045281 GO:0009909
Acco13g0824 359 SMART bboxneu5 10 48 IPR000315 GO:0008270
Acco13g0824 359 SMART bboxneu5 53 100 IPR000315 GO:0008270
Acco13g0824 359 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Acco13g0824 359 MobiDBLite consensus disorder prediction 192 229 - -
Acco13g0824 359 CDD Bbox1_BBX-like 57 100 - -
Acco13g0824 359 Pfam CCT motif 305 347 IPR010402 GO:0005515
Acco13g0824 359 Pfam B-box zinc finger 13 55 IPR000315 GO:0008270
Acco13g0824 359 Pfam B-box zinc finger 55 100 IPR000315 GO:0008270
Acco13g0824 359 CDD Bbox1_BBX-like 15 55 - -
Acco13g0824 359 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0824 Acco-ChrAcco13 6255885 6257950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0824 11 347 C2C2-CO-like Transcription Factor Family AT3G02380 38.304 2.08e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco13g0824 zf-B_box 2.2e-06 No_clan