LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g0818	ATGTCGTTTGTTCTGAGCTCCCCTAACAAACGACTCAGAACCCAAGACCAGGAGGATTCCGATCATAACCACCACTTACCATCTTCATTCGAGGACGACCAGCCTGATTCTTGTGGAATTTGCTACGCCGACCATGGCTCTTCAATCAGAGGTGAAATTGATTGTTGCAATCACCTCTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCCAGATGCCCACTCTGTCGTCAAAGATTCTCCACCGTTCGCCGCCCCCCTAAGCCCGGCGTCTTCCCTTCTTCGCGTCTCGTTAAAGTCCCAATTCGTGACCAGGTTTACCACGTTCATGGAAATATCGCAACAGGTCCTGCGGATCCTTATTCTGAAACTAGGTGTAGTGTCTGTAATGGCGGGGAAGATGAAAGTTATCTTCTATTATGTGATCTTTGTGATACTGCTTCTCATGCATATTGTGTTGGCCTTGGATATGTTGTGCCTGAAGGTGATTGGTTTTGCCAAGACTGTACTGTTTCCAGGTCAATGAATGACAATCACAATGTAGACCATCAATGTGACATACCCACAGCTGAATCAAGTGTAACAATCCTTGATATTGTGAGAGAACCAAACAGCCAGATGGTCCAAAGATCAAGACCCTCTCCTCTTGTTACCACTCTACCTGATAGGGTCAGTAGAAGCATAGAAAGGAATCATGACATAAGTTTTACCCCTTTACCTGAGAGGGTGAATAGAAGCAAAGATAGAAATCGTGACATAAGTGCTCGGACATTGCGCAAATGCCGTAACGTGCAACGTAATATACAAGCTTTGCGTCAAAATTGGAATGCCTTGAGAAATGGCTCATTAACGTTCTCTTCAGCTCCTTCTGGATCTGTTGTCAGGCATGATAAAGAACAGAACACTGATTCCCTACCTCGTGGAAAGTCAGATCAACTGCATTCTTCAGCTTCCACAAGCCTTCAGCAATCTATAATTCAAAGCGGCCCTTCTAATAACAAAATGGATGAGAGTGGCTCAGAGGATGTGAACAAGGCTTGGAAAATGCTGGAGAGAGCAAGGATGATGGGAAAGACTAATAGTCATAAGGGCTGCATCCTTCCACAGGGATTAGGTCACCCTTCAATAGTTGTAGGACCTAGAAAAGCACCAGGAATTCATTGTAATGAACAAGGATTGAAGATTCATCAATCAGGAAGATCCACAGGAAATGAGAAGCGATACAGCTTTTCTAGTTTCAATAAGGATATGAACAATTGTCAGCCTCTGGAGTCGGGAGGGAAAAAGCATAGTGGGGTCACACATAAGGCAACAACACCAAATATTAGGGACCAAGCTTCTCATTTAGAAGAATGCTGTGAAGCTTCATTGCCTAGTAAAATGCCAAGTAGTATTCTATGTATTCCCAGACATGAAAATGGGGAGAGAAATTTTGCCAAGGAACAAAGCAGGTCTTCTTGCTTAGTAACTTCAGTGGGTTCTGCTCCTTCTGATGGCAAGATTGGAAGGGTTTCTTCCTCAAGCAGGGATGAAGGTGAAAAAAATAGTTTGTCTAAAAGTTTTGGGCATGCAAACACACAAGACAGTGAAGATGCTAAAAATGAGATCAAGTCTCTTGTCAAGCTCAACCTGAAAATCCTCGATAAAGAAAAACGACTAGGTGTTGATGCATTCAAGGAAATTGCTAGGCACTCAACCCACGCTATCTTAGCTGCCCGTCGATCGGAGCGCGAAAAGCTGGGGGCAAGCTCGTCGAGCTCTCTGTGCAGTCACGGGGGCGATCATGAGCATTTGCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTTCATGTTTGTCAAGAATGTGGTCAGCTCCACTATGATGCAGAAGGTAGGTGGGGGTGGATCTTCATCTTCCTGA	1917	0.4444	MSFVLSSPNKRLRTQDQEDSDHNHHLPSSFEDDQPDSCGICYADHGSSIRGEIDCCNHLFCFVCIMEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVKVPIRDQVYHVHGNIATGPADPYSETRCSVCNGGEDESYLLLCDLCDTASHAYCVGLGYVVPEGDWFCQDCTVSRSMNDNHNVDHQCDIPTAESSVTILDIVREPNSQMVQRSRPSPLVTTLPDRVSRSIERNHDISFTPLPERVNRSKDRNRDISARTLRKCRNVQRNIQALRQNWNALRNGSLTFSSAPSGSVVRHDKEQNTDSLPRGKSDQLHSSASTSLQQSIIQSGPSNNKMDESGSEDVNKAWKMLERARMMGKTNSHKGCILPQGLGHPSIVVGPRKAPGIHCNEQGLKIHQSGRSTGNEKRYSFSSFNKDMNNCQPLESGGKKHSGVTHKATTPNIRDQASHLEECCEASLPSKMPSSILCIPRHENGERNFAKEQSRSSCLVTSVGSAPSDGKIGRVSSSSRDEGEKNSLSKSFGHANTQDSEDAKNEIKSLVKLNLKILDKEKRLGVDAFKEIARHSTHAILAARRSEREKLGASSSSSLCSHGGDHEHLHKSTLMPNCCRQCFFMFVKNVVSSTMMQKVGGGGSSSS	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g0818	638	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	15	97	IPR013083	-
	Acco13g0818	638	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	114	186	IPR013083	-
	Acco13g0818	638	MobiDBLite	consensus disorder prediction	288	343	-	-
	Acco13g0818	638	Pfam	PHD-finger	127	173	IPR019787	-
	Acco13g0818	638	SMART	ring_2	38	78	IPR001841	-
	Acco13g0818	638	MobiDBLite	consensus disorder prediction	308	339	-	-
	Acco13g0818	638	SUPERFAMILY	RING/U-box	37	93	-	-
	Acco13g0818	638	ProSiteProfiles	Zinc finger RING-type profile.	38	79	IPR001841	-
	Acco13g0818	638	SMART	PHD_3	127	172	IPR001965	-
	Acco13g0818	638	Coils	Coil	256	276	-	-
	Acco13g0818	638	SUPERFAMILY	FYVE/PHD zinc finger	119	175	IPR011011	-
	Acco13g0818	638	CDD	RING-HC_Topors	35	82	-	-
	Acco13g0818	638	ProSitePatterns	Zinc finger RING-type signature.	56	65	IPR017907	-
	Acco13g0818	638	MobiDBLite	consensus disorder prediction	480	532	-	-
	Acco13g0818	638	MobiDBLite	consensus disorder prediction	1	33	-	-
	Acco13g0818	638	ProSiteProfiles	Zinc finger PHD-type profile.	125	174	IPR019787	-
	Acco13g0818	638	Pfam	Ring finger domain	36	79	IPR001841	-
	Acco13g0818	638	PANTHER	F18C1.6 PROTEIN	23	629	-	-
	Acco13g0818	638	MobiDBLite	consensus disorder prediction	12	31	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g0818	Acco-ChrAcco13	6182610	6185007	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g0818	100	177	C2H2 Transcription Factor Family	AT3G01460	34.177	6.40e-10	60.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Acco13g0818		PHD	1.2e-09	CL0390