Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0808 ATGGAGTCTTGGAGTCATGATTCTGAAGAGAAAGGGTTTGTGTCTAGCGATACGCTCTCACCTCCTAATACACTTTCCAGAAGTAAAGGTTCCATCTTGGGATGGGAATTGAAGAGCCCATCTGGTATTTCCAGCGATGTGTTGTCCTCGGATCAACCAAACGTAGGAAATCAAGGTTTTGAGGAAATGGGTTTTCCAGAAATGTTGGGGAAACAATTGTCCGATGATCCAATTAGCAGTGTGTCCAACAGAAAGCTCGAAGGTGGTCGTTTTATGGCTGCTGCCACCCCAATTGCTATTTCTGGAGTTGAAGACTCAAATTCGAAGCTTTCTAACTCCGTGGTTGAATCTAACGGTCGAGATTCGCTCATTGACTTGAAGCTGGGACGATTTGGCGATCCCAGAGAAGCCATGGATTCTGCATTCTCCAAAGGAACCCTGATTTTGTCTTCTTCAGAATCATCGGCTCCGACCAAGAGAGTACGAGGATCGGGTGTTCATTCACAAACAGCGCACTGTCAAGTTTATGGATGTAATAAAGATCTGAGCGGTTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAAACTGCCAAAGTCATAGTCAACGGCATCGAACAGAGATTTTGTCAGCAATGTAGTAGGTTTCACTTGCTGGCTGAATTTGATGATGGCAAGCGCAGCTGTCGCAAACGCCTTGCAGGTCATAACGAGCGCCGGCGAAAGCCACAAGTTGGTATTCACTCTGGAAAGGCTGGAAGATTGCTTCATTCATATAGTGATAGCAGGTACCAGAGCACCATGCTAACAACTGCGTCTTTTATCTGCCAAGACATACCTCCGACAGGGACTTTGCACTCTGACAAGTATGGAACAAATGACTGGTGGAGGCCGATAAAAAACGAAGATGGGACTAATTTTAGGCATCTACCTGCTGTTCCTATTACAAACGGACACCCTCAGCCAAGATCTCTATTCCCTCCATATACCGATAGACAATTTCCTTTTCTTCATGAAAATGTCGCCACGTCCAGTTCAGGAAGCATCTTTTGTGAGAACAACAGTCAGTATCCTCCACCTCCTCCTGCCATGGGACCAAATTCTGGGGCACAATCTTTGTTTCAAGACACTTCCTTAAGAAGTGAGGACTTCAATGTTTATGATACTACGTCAACGATTCAGGGACTATCGGGAGTTTCAGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGGCACTCTTCAGGAATCCCCATGGCTCGCCCCTTGTTCGTTCCAAGCGGTAGCCATAGTAATTACAGCCAGAGTCAGCTCACCGACAAGAACATAGGAATCAGCTCCCAGGCTTCTACTACAAGCGCAGGAGTTCCCGATAGGTTTAGATCCGAGATGAATCCTGCTGCCACTGATGGAAGTCATCTTAGTCCCGTACTGATATCAGACAATAGTAATATTCTCCATTTTGAAATGTCAGATGGGATTTTCCAAGAGCCTGGTTTTGTGAACATGAAAGATGGTCTCACCTGTGAAGATGGCCCAACTATTGACTTGCTCCAACTTTCATCACAGCTTCAGCGAGTTGAGCGTCAGAGGCAATCCTCGTCGCAGGCGAAGCGAGATAATGATTCTACTCTGGATGAGGAAACAAAACAGTGTGGAAGACACCTATGCTGA 1704 0.4595 MESWSHDSEEKGFVSSDTLSPPNTLSRSKGSILGWELKSPSGISSDVLSSDQPNVGNQGFEEMGFPEMLGKQLSDDPISSVSNRKLEGGRFMAAATPIAISGVEDSNSKLSNSVVESNGRDSLIDLKLGRFGDPREAMDSAFSKGTLILSSSESSAPTKRVRGSGVHSQTAHCQVYGCNKDLSGSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLHSYSDSRYQSTMLTTASFICQDIPPTGTLHSDKYGTNDWWRPIKNEDGTNFRHLPAVPITNGHPQPRSLFPPYTDRQFPFLHENVATSSSGSIFCENNSQYPPPPPAMGPNSGAQSLFQDTSLRSEDFNVYDTTSTIQGLSGVSDSGCALSLLSSQSQNSSRHSSGIPMARPLFVPSGSHSNYSQSQLTDKNIGISSQASTTSAGVPDRFRSEMNPAATDGSHLSPVLISDNSNILHFEMSDGIFQEPGFVNMKDGLTCEDGPTIDLLQLSSQLQRVERQRQSSSQAKRDNDSTLDEETKQCGRHLC 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0808 567 MobiDBLite consensus disorder prediction 542 567 - -
Acco13g0808 567 Pfam SBP domain 173 246 IPR004333 GO:0003677
Acco13g0808 567 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 558 IPR044817 GO:0003677
Acco13g0808 567 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Acco13g0808 567 SUPERFAMILY SBT domain 171 251 IPR036893 GO:0003677|GO:0005634
Acco13g0808 567 MobiDBLite consensus disorder prediction 1 29 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 437 468 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 43 62 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 43 57 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 417 485 - -
Acco13g0808 567 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Acco13g0808 567 Gene3D - 163 234 IPR036893 GO:0003677|GO:0005634
Acco13g0808 567 Coils Coil 527 547 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 538 567 - -
Acco13g0808 567 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0808 Acco-ChrAcco13 6063871 6066971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0808 124 265 SBP-box Gene Family AT1G69170 59.859 4.57e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco13g0808 SBP 9.6e-32 No_clan