Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0794 ATGGCGGAATCAGTTACCTCAGATGCGATTTCGATACTGCTTGCCAACCCCTCACCAGATTCTTCCTCGGAGCTTCCTGAGATCATCGTCCAAATTCTGGATCTCAAGCAAAGCGGTAACAGATTCATGTTCACCGCTAGCGATGGAAAGATGAAGTTAAGAGCAATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCTGGAAGTATTCAGAATCTGGGTCTTATCCGCATTGTTGATTATACTCTCAATGATATCCCAAATAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGGTCTCTCCTGCTCTTGAAATGGAGGTAAAAACAGAAGTCAAGAGTGAGTGCCCCACTATGCTTTTGAACCCAAAGCAAGAGGGTGAAATCAAAAGCGAGGTGAAAAGTGAAGCTGCTGGCATTATTTTGAAACCAAAGAAAGAAATAGTGTCCAAATCTGCCGCTCAGATTTTACACGAACAACATACAAACACTGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCGCCCTCTTGTCTCCTTAAATCCTTATCAGGGTAATTGGACGATAAAGGTTCGTGTAACAAACAAAGGGAACATGCGCTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTGTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTCTATGACAGATTTGCGCTTGGGAAGGTCTACTACATATCCAAGGGAACTTTAAAGGTCGCCAACAAACAGTTTAAAACTGTCCAAAACGATTACGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAACGAAGAAAGTTTTGTTCCAGAAACAAAGTTTAATTTTGTCCTGATTGATCAGCTAGGTCCTTTTGTCAATAGGAGTGAGCTTGTTGATGTCATAGGAGTTGTTCAGAACGTGTCCTCCACCATGAGCATTCGAAGGAAGAGCAACGATGAGACTATTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACCAGTGTAGGGCAAGAATTGCTGGACAATGCTGATAAATCTCCAATTGTTGCAATCAAGTCTCTCAGGGTTGGGGATTTTCAGGGTGTTTCGTTGTCAACCATAAGCAGAAGTGTAGTTCTGATAAATCCTGATGTACCTGAAGCAAATAAGCTTAGATGCTGGTATGAATCTGAAGGTAAAGACGCTCCAATGGCTTCTATTGGCTCTGGTGCATCTGTTACCAAGAATGGAATGAGATCAGTGTACTCTGACCGTATTTCATTAGCTCAAATAACCTCAAACAAATCCTTGGGAGAGGACAAGCCTGCATTTTTCAGCATCAGGGCACACATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATAGAGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGTCAGAAAAATGTTGAAAGCACTTTAAGGTATATATTGGTCGCAAGAGTTTCTGATGCAAGTGGTGAAGCTTTTGTGTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGATGGAGAAGATAATCCATACCAAATGAAATTGAAACAAGTGACTTGGACCCCTCATCTATTCCGCGTTAGTGTTTCCCAGAATGAGTATATGAACGAGAAGAGGCAGAGGATAACTGTCCGAACTGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTCCTGGAAGAGATTTCAAAGATGACAGCTTCACGATAA 1872 0.4236 MAESVTSDAISILLANPSPDSSSELPEIIVQILDLKQSGNRFMFTASDGKMKLRAILPSNQNSQVISGSIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCESVSPALEMEVKTEVKSECPTMLLNPKQEGEIKSEVKSEAAGIILKPKKEIVSKSAAQILHEQHTNTAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRSELVDVIGVVQNVSSTMSIRRKSNDETISKRDITIADETKKTVVVSLWSELATSVGQELLDNADKSPIVAIKSLRVGDFQGVSLSTISRSVVLINPDVPEANKLRCWYESEGKDAPMASIGSGASVTKNGMRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAFVSIFNNEAEEIVGCSANELDSLKSQDGEDNPYQMKLKQVTWTPHLFRVSVSQNEYMNEKRQRITVRTVAPVDYAAESRILLEEISKMTASR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0794 623 CDD RPA1_DBD_A 180 283 - -
Acco13g0794 623 Pfam Replication protein A OB domain 308 405 IPR031657 -
Acco13g0794 623 CDD RPA1_DBD_B 313 419 - -
Acco13g0794 623 Gene3D - 177 286 IPR012340 -
Acco13g0794 623 FunFam Replication protein A subunit 177 286 - -
Acco13g0794 623 Gene3D - 291 430 IPR012340 -
Acco13g0794 623 NCBIfam replication factor-a protein 1 (rpa1) 3 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco13g0794 623 FunFam Replication protein A subunit 290 429 - -
Acco13g0794 623 CDD RPA1_DBD_C 451 618 IPR047192 -
Acco13g0794 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco13g0794 623 Gene3D - 431 619 IPR012340 -
Acco13g0794 623 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Acco13g0794 623 Gene3D - 4 112 IPR012340 -
Acco13g0794 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Acco13g0794 623 FunFam Replication protein A subunit 433 619 - -
Acco13g0794 623 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco13g0794 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Acco13g0794 623 FunFam Replication protein A subunit 4 114 - -
Acco13g0794 623 Pfam Replication factor-A C terminal domain 467 611 IPR013955 -
Acco13g0794 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Acco13g0794 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0794 Acco-ChrAcco13 5914953 5918272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0794 1 623 Core DNA Replication Machinery Family AT5G08020 66.454 0.0 879