Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0761 ATGGTACTCACGGAAGAACAAAGAAAACAAGCCGAAGCGAACCGATTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAATCTCGTGGAGAGAAAGATCCTTGGCAACTCTTCAAGTGCAGTAAGATCTCTTCCGAGTCTACTCCGAAGCCCACACCCACTGTTCACCAATCCCAGTCAGTCTCCGTTGATCCTGTTTCTGCCGCACCTTTGCCCCATAAATTTTTGGTTAGGCTCGAAATATGCTCTCCCGATTCCTTCTCTACAACTCCTCTTCCCCTTCGGGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTAAGTGATCATTTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGAAGAAACGCCTGTGTGTATTACTTGAGGGATTACCATGCTGTCCTTAAATGTTTGAAGATTGTCACGGACATAGAAGTTGAAGAAATTCCGCGGGCAACTTTGAAAGCCGTTGAAGCATTTTCACATTTCTCTGGCACGGAGCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGATGAGTTAATTGGGAAGCTACCAAGGGCTCTGTTGGACGCACTGTTGCCTTTCCAGAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTAGCCGGTGTCTTATTGCTGATGAAATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCGGCTGTTTTGCGTTTTACATGGGCGGAAGAATTAGAGCGGTGGCTTCCCTTTTGTTCGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGGTGCCCTAGAATTGTAGTTATTTCTTATACCATGCTCCATCGCTTGAGGAAGAGCATGCTTGAGCGAGAATGGGCTCTCTTAATTGTTGATGAATCTCATCATGTGCGGTGTACAAGGAAGAGCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAAGCGCATAATACTGTTATCTGGGACACCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGAGAGAATAAATATGTGTTTGCTAAAACTTACTGTGATTGTAAATATATCAAGGGAAGCCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTGCTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTACCCCCAAAACGGAGGCAAATTATAAGGTTGTTGTTGAAGAGATCGGATGTAGTTGCTGCAAAGATGGCAGTTGGAAAGCTGAATGGCAGTACTTCCAAAAGTGACACTGAAGACATGACTTTCGACAGTTTTGATGAACCTGATGGGATGTTTAAGAGATCAGACGTAGTTGCTGCAGATACTGCCGTTGGGTTGTCAGAAATTGACACTTTGGACAGTGTTGATGAAGAGATAACTTTGGAAACCTTGGATGAATCTGAAGGGAAGCTTTCTTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGCCGGGTCAGAAAATGCTTCGAAAATGATCGTTTTTGCTCATCATCACAAAGTTCTTGACAGGGTGCAGGAGTTTGTATGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAAAACACTTGCTAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAGACCAGAGGTTAAAATTGCAATAATTGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAACAGCCCAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCTGATGCTTCAGGCCGAGGATAGAGCTCATCGACGAGGACAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTTGGATGAGTCGCATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGAAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAGACCAAGAGAAACTATGAAGGGCAATCTGCATCTGATGAAACTTCAGAACAGGTGACCACATTGCCGGATTCTGCCTCAGTTTCAAATTTGGAACCTTCCCAAGGAAATTCCGAGGAATCAGAAGCAAAATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAAGCGAGCCTTCTATTTTGGATGTAGATTTAGATGTAGATGTTTTTGAAACCACGGAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGACAAGGGTTATGGAAGCAATGATCAGATGATCAGTGATAAAGATGATAATCAAGGAGAAGAGAATAAAAATTCATTAACAAAGAAAACAGATGACTACCAACCTGTTCAGCCAGTTGAAGCTGAAAAAAGTTCCTCTCTCCACATTGAATCTCTACGATTTGAGGTGAGCCCATACACTGGAAGGGTCCACTTGTATACTTGCATTTTGGGTGCAGATACAAGACCAAGACCACTTTGTAAGAATTTTCGACCAGAGGAACTTGAGTTGCTCTCCATCTCTGATGATGATAAGAAAAAGGAGACTATTGGCGACAATCCTACTTTTGCAAATGCTCTTTTGGGATTTTTAAATGAATGGAAGAAGCTAAGGCCAATTGAGCGAAGGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCCGTTGAATTGTGCTACTTGAGCGAAAGTAGTTGCCACGACAAGGGGGGATTATTAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTGTCTGCGAAGTGGCAATGGCAAGAAAGAGAAAGAATACACTCAAGGTTGGACTCTGACAAATGAGCCACTCTGTAAGCTTTGTCAAAAGACATGCATTAGTAACAATGCCAAGACACCTGAATACTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATAAGAACAAGCAACAAATTCCTTCGTCAGGCAAGAACTTTTGAACAAGGTGTGTGCTCGAATTGCCATTTAGACTGTCATAAACTAGTTGCACATATAAAACCTTTGCCACTAGCTAAGCGAAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAACGAAAAAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTCGACTCGAGAATATGAGGACTCTTTGCGTGGCCTGCCATTACAATGTTACAACAGCACAGTGTGCTGAACGACGCAAAGAGAGGGCCAGGGCCAGGAAACAACTAAAATTAGTAATGAGTGAGTTAAAGGCAGGTCAAACAAAGGTCGCCACAGGTTCTAACATCAAGGAGCAGGGTCTAATTGAGGTACAAGATGATGGAAATGAGGATGAGCTCATTGTAAAGGTGCCTGGAAGTGCTTATTCAGTAGCTAATGGCTAA 3660 0.4322 MVLTEEQRKQAEANRLAAIERRKAVLESRGEKDPWQLFKCSKISSESTPKPTPTVHQSQSVSVDPVSAAPLPHKFLVRLEICSPDSFSTTPLPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVYYLRDYHAVLKCLKIVTDIEVEEIPRATLKAVEAFSHFSGTERWIPCRPEHLSDDKVDELIGKLPRALLDALLPFQRDGLRFGLRRGSRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCSPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTRKSSEPGEIKAVLDVASKVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGENKYVFAKTYCDCKYIKGSHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKMAVGKLNGSTSKSDTEDMTFDSFDEPDGMFKRSDVVAADTAVGLSEIDTLDSVDEEITLETLDESEGKLSYQELGIAKLSGFREWLSLHPVIAGSENASKMIVFAHHHKVLDRVQEFVCEKGISFVRIDGKTLARDRQSAVVSFRSRPEVKIAIIGILAAGFGVDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTKRNYEGQSASDETSEQVTTLPDSASVSNLEPSQGNSEESEAKLGDQADQQTCFADKVSCPESSEPSILDVDLDVDVFETTEKCSGFDMSKLDKGYGSNDQMISDKDDNQGEENKNSLTKKTDDYQPVQPVEAEKSSSLHIESLRFEVSPYTGRVHLYTCILGADTRPRPLCKNFRPEELELLSISDDDKKKETIGDNPTFANALLGFLNEWKKLRPIERRKLLGKPLQLPLAVELCYLSESSCHDKGGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRSGNGKKEKEYTQGWTLTNEPLCKLCQKTCISNNAKTPEYFEDLFCNLVCYEEYRIRTSNKFLRQARTFEQGVCSNCHLDCHKLVAHIKPLPLAKRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYNVTTAQCAERRKERARARKQLKLVMSELKAGQTKVATGSNIKEQGLIEVQDDGNEDELIVKVPGSAYSVANG 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0761 1219 Gene3D - 452 739 IPR027417 -
Acco13g0761 1219 Coils Coil 9 29 - -
Acco13g0761 1219 Pfam SNF2-related domain 221 451 IPR000330 GO:0005524|GO:0140658
Acco13g0761 1219 SMART ultradead3 200 386 IPR014001 -
Acco13g0761 1219 MobiDBLite consensus disorder prediction 816 831 - -
Acco13g0761 1219 MobiDBLite consensus disorder prediction 42 61 - -
Acco13g0761 1219 Gene3D - 1042 1174 - -
Acco13g0761 1219 CDD SF2_C_SNF 535 664 - -
Acco13g0761 1219 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1167 - -
Acco13g0761 1219 MobiDBLite consensus disorder prediction 717 752 - -
Acco13g0761 1219 Pfam Helicase conserved C-terminal domain 553 653 IPR001650 -
Acco13g0761 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 705 IPR027417 -
Acco13g0761 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 699 IPR001650 -
Acco13g0761 1219 Gene3D - 182 424 IPR038718 -
Acco13g0761 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 377 IPR014001 -
Acco13g0761 1219 SMART helicmild6 570 653 IPR001650 -
Acco13g0761 1219 CDD DEXHc_HARP_SMARCAL1 204 428 - -
Acco13g0761 1219 MobiDBLite consensus disorder prediction 717 759 - -
Acco13g0761 1219 Pfam HNH endonuclease 1116 1148 IPR002711 GO:0003676|GO:0004519|GO:0008270
Acco13g0761 1219 FunFam SNF2 DNA repair protein, putative 178 427 - -
Acco13g0761 1219 CDD HNHc 1110 1150 IPR003615 -
Acco13g0761 1219 MobiDBLite consensus disorder prediction 800 836 - -
Acco13g0761 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 428 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0761 Acco-ChrAcco13 5675743 5687169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0761 558 706 RAD5 or RAD16-like Gene Family AT1G11100 35.099 3.25e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco13g0761 SNF2_N 4.4e-24 CL0023