Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0759 ATGGATAAAGATCCGAACCGGAAAAGACTCGTCATTGACGTCGTCGTGACTGAACCTTTGCTTCCAAACTCCATTCTTCATCCCCAGCAAAGACAAGTCCCCATGTCTAGTTATGAGCTTGCAGAGCTAACCTGGAAAAACGGCCAGCCAGTCATGCACGGGCTTAGTGGCCTCCTACCCACGGCCTACCAGAAGCCCACATGGATCAGGGCCCATGATACTCTGGAGTCCATTGTTCAACAGGCTGCTACATCATGCCAACGTCGTCAAAACTCAAATTTCTTCATGATGCCACAGGATCATCATCATAATCATAACCCAACGGGTATCAGCTCCACCGTCGCCCCCTCCGCCGGCGTGACTGAGAGATCCGGTCAAGCACAATCGGAGCCGACTCCGGAAAGGAAGCGAGTCCAGTCGGATTCTGGCTATCTCTACCTCGGCAACGGTTTGGAAGAATGTGAACCCAGCAGTGGAGGTTGTGCTAGTGGCAGCGCCACATTCTGTAGAAGCTTCAAGAGAAGTAGAACACTTGAGGATGATTCCCCTTCTCTTTATGACTCGGAAAACCAAGACCAAGAAGAAGATAGAGACACTAAGGAAGAAACAGGCCGTTCCAACTCAACAAGAAGAAATCGAGCTGCGGCTGTCCATAACCAGAGTGAGCGGAGACGAAGGGATAGAATTAATCAGAAAATGAAAGATTTGCAGAGGTTGGTGCCCAACGCCAGCAAGAATGATAAAGCTTCAATATTAGACGAAGTGATTGAATACTTAAAGCAGCTTCAAACACAGATACAGATGATGATGAGTATGAGAAACTTGCCACAACAGATGATGATGATGATGATGCAACAACAGCTTCAGATGTCTATGCTGGCTAGAATGGGTGTTGGGTTGGGCCCAGGCCAAGGCTCGCCAGGAATGAGCCTTGCCCGCCCACCAGTTATTCCTTCTCTTCCTCCACAACTCACAGCTGCAGCTCCTGCTATTACTCCTTCCTTCATGATGTCTCCATTGATTCAAGCCCATGCTCCTCTTCCAAGGCCTGAACTTGCACCATCTGCAGCTACCTCCAATGCCTCAATGTCTTTGCCTGATCCTTATACCACTTTTCTTTCACAATCAGTAAATATGGATGTTCTCAGCAACATGGAAGCGCTTTACCAGCAACAGATGAGACAGAACAATCAGAACATGAAGAGCCAACATCATGGACAAGGGAATTGA 1230 0.4821 MDKDPNRKRLVIDVVVTEPLLPNSILHPQQRQVPMSSYELAELTWKNGQPVMHGLSGLLPTAYQKPTWIRAHDTLESIVQQAATSCQRRQNSNFFMMPQDHHHNHNPTGISSTVAPSAGVTERSGQAQSEPTPERKRVQSDSGYLYLGNGLEECEPSSGGCASGSATFCRSFKRSRTLEDDSPSLYDSENQDQEEDRDTKEETGRSNSTRRNRAAAVHNQSERRRRDRINQKMKDLQRLVPNASKNDKASILDEVIEYLKQLQTQIQMMMSMRNLPQQMMMMMMQQQLQMSMLARMGVGLGPGQGSPGMSLARPPVIPSLPPQLTAAAPAITPSFMMSPLIQAHAPLPRPELAPSAATSNASMSLPDPYTTFLSQSVNMDVLSNMEALYQQQMRQNNQNMKSQHHGQGN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0759 409 SMART finulus 219 268 IPR011598 GO:0046983
Acco13g0759 409 MobiDBLite consensus disorder prediction 96 141 - -
Acco13g0759 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 290 IPR036638 GO:0046983
Acco13g0759 409 Coils Coil 219 246 - -
Acco13g0759 409 Gene3D - 208 273 IPR036638 GO:0046983
Acco13g0759 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Acco13g0759 409 Pfam Helix-loop-helix DNA-binding domain 217 263 IPR011598 GO:0046983
Acco13g0759 409 MobiDBLite consensus disorder prediction 216 234 - -
Acco13g0759 409 MobiDBLite consensus disorder prediction 96 133 - -
Acco13g0759 409 CDD bHLH_AtPIF_like 213 276 IPR047265 -
Acco13g0759 409 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 402 IPR031066 -
Acco13g0759 409 MobiDBLite consensus disorder prediction 177 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0759 Acco-ChrAcco13 5663361 5666774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0759 33 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.502 2.27e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco13g0759 HLH 3.6e-15 No_clan