Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0735 ATGGGAAGAGTTAAGCTAAAGATAAAGAAGTTAGAGAACATTAGCAATCGACAAGTGACTTTTTCAAAGCGAAAGAGCGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGACATTGCCCTTCTTATGTTTTCTCCGACTGGGAAGCCTATATTACTACAAGGAGAGCGGAGCAATCTTGAGGAGGTCATTGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCTATTGGGATAACATAGAAAAGATCAATAATGTTGAACCTCTTAGGCAAATGGAAGAGTCACTAAAGGAGTCAATCAACCGAGTACGTCTACACAAGGAAAATTTGGGGAAACACCACATAATGTCACTTGAATGCGCTAACCAGGAAGGGATGACTTTACCCATGATGATGGCTGGTTTGCAAGAACCTCAACCTCTGTCTTGGCTATTGAATAATGATAATAATCAATTGATAATGCCTAGTGAACCAAAATTTCTGCCATATAGTGATAATCCCAATAGAGGTGCTGAATGCCCCATTAACGTTTCACTACCAGACTATTCTGGTTATATAAGCACTGGCAAACTTGAGGCCGGCAACTCAGCTCAAGTTGCTACTTTGGGTCAGGGTGGTGGTACTATGAATGAGTTTAGTGAAGGTTCTTGCTTGAATGCGCAACATTGCGAGCAGTTTTCATACCCTCCACTGCCGGATAATGAGGGTCAGAAGCACCATCAAGTTATGAACGGTAGACCGAGCCCTGTGGATTATCAAGTTAATAGCAACTTTGATCTTCCTAGATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTGGACCTTGTAGCATTGCCTTGTACAATGAGAATGGCTACCATCAGATCCGAGCTGTAAATTTGAATTTTGTAAGGAGTGAAAAGTCTCAGCGAGTCATCCTCAGCCACTTTGATCCTGCGATTGCTGCTTTGGAAGCCATGTTTCAATTCGTGGGACACCCAATACAAAGTATCAATCAAGAAGGCGGCTCTGGAAGTCACGACGACATCTCAGGCAAATACATGCGAGCAAATCATTTTCTAGTACAGAGGATCAAGCACAATTTTCTTCAGTTCCAGAGTGCAGTTGGATCTGAAGATCCTGTTAAACATGAAGCTGAACCTGACCATGCCCTAGCCAATGACTAG 1281 0.4122 MGRVKLKIKKLENISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSYWDNIEKINNVEPLRQMEESLKESINRVRLHKENLGKHHIMSLECANQEGMTLPMMMAGLQEPQPLSWLLNNDNNQLIMPSEPKFLPYSDNPNRGAECPINVSLPDYSGYISTGKLEAGNSAQVATLGQGGGTMNEFSEGSCLNAQHCEQFSYPPLPDNEGQKHHQVMNGRPSPVDYQVNSNFDLPRSIFENGHQFWNSTSGPCSIALYNENGYHQIRAVNLNFVRSEKSQRVILSHFDPAIAALEAMFQFVGHPIQSINQEGGSGSHDDISGKYMRANHFLVQRIKHNFLQFQSAVGSEDPVKHEAEPDHALAND 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0735 426 Coils Coil 77 97 - -
Acco13g0735 426 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco13g0735 426 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco13g0735 426 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco13g0735 426 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Acco13g0735 426 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Acco13g0735 426 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Acco13g0735 426 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Acco13g0735 426 Coils Coil 124 144 - -
Acco13g0735 426 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Acco13g0735 426 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Acco13g0735 426 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0735 Acco-ChrAcco13 5416328 5423542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0735 1 250 Type I MADS-box Gene Family AT2G03060 44.251 9.83e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco13g0735 SRF-TF 2.1e-21 No_clan