Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0672 ATGGTGAGGCCTCCATGCTGTGAGAAGCTCAGTGTTAAAAAAGGTGTTTGGACTCCAGAAGAAGATGCAGAGATGATGGCATATGTCTCAAAGCATGGATCTGGTAACTGGACTTCTTCTTTTCCCAAAAAAACAGGTTTTAAGAGGTGTGGGAAAAGTTGCAGGCTCAAGTGGACTAATTGCCTCAGGCCAGATCTTAAGAAAGATAGCTTCACACCCCAAGAAGAGGATTTAATTCTTAAGCTTCATGCAGCCATTGGAAGCAGGTGGCCTATGATTGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGAATTACTGGAACACAAAGCTGAAGAAGAAGCTCACTGAGATGGGAATAGACCCTATCACACACAAGCCCTTCTCTAAACTCCTAGCTGACTATGGAAACATTGGAGGCATCCAGAAACCAAACACCGGAATTGGGTCTCTCAGTAAAGACCTGAAGAACACAGTGTTGTTCAGATCAGACCCATTTCCTAAGCTACCTTCAACTTCACCAAAATTGGAACCACCAACAGAAAGTTGCAGCTTTTTCAGTAACAGAGACATGGTGATGGAGAAGGAGACAATCCCAGCAACTATATTTGGGGAAGGCTTCTTATCGTCGTCATCAATTTCATCATCATCTTCTATTTGTTCCAATGCTGCTCAAGAAGAAGGCGGCTTGTCTTTACCCTTTTGTTGGAATGATTTTCTTCTAGAAGATGTTTTCCCACCACCACCTGCTGCTGCTGATAACCCAGAGAATGAAAATCCGACAACCAACGAGAATAAGAATGAGGTGACGTCACAGCAAATCCCCACCAGCAGTAGTAGTGATGTTCGTTATTCAACGTCATCCTCTGAGATTTCTTTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTCTTGAATTTCCCTCACCTAATGGAGGAACCTTCCACGTCCATTTACTGA 969 0.4345 MVRPPCCEKLSVKKGVWTPEEDAEMMAYVSKHGSGNWTSSFPKKTGFKRCGKSCRLKWTNCLRPDLKKDSFTPQEEDLILKLHAAIGSRWPMIAQQLPGRTDNDVKNYWNTKLKKKLTEMGIDPITHKPFSKLLADYGNIGGIQKPNTGIGSLSKDLKNTVLFRSDPFPKLPSTSPKLEPPTESCSFFSNRDMVMEKETIPATIFGEGFLSSSSISSSSSICSNAAQEEGGLSLPFCWNDFLLEDVFPPPPAAADNPENENPTTNENKNEVTSQQIPTSSSSDVRYSTSSSEISFVEAMLDQENEMFLNFPHLMEEPSTSIY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0672 322 CDD SANT 17 60 IPR001005 -
Acco13g0672 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Acco13g0672 322 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Acco13g0672 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Acco13g0672 322 SMART sant 67 115 IPR001005 -
Acco13g0672 322 SMART sant 13 64 IPR001005 -
Acco13g0672 322 MobiDBLite consensus disorder prediction 248 285 - -
Acco13g0672 322 MobiDBLite consensus disorder prediction 257 285 - -
Acco13g0672 322 Gene3D - 11 68 - -
Acco13g0672 322 PANTHER F14D16.11-RELATED 1 318 - -
Acco13g0672 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco13g0672 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Acco13g0672 322 FunFam Os07g0634900 protein 70 129 - -
Acco13g0672 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Acco13g0672 322 Gene3D - 69 129 - -
Acco13g0672 322 CDD SANT 70 113 IPR001005 -
Acco13g0672 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Acco13g0672 322 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0672 Acco-ChrAcco13 4890306 4893065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0672 1 316 MYB Transcription Factor Family AT3G28470 44.985 1.48e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco13g0672 Myb_DNA-binding 5.9e-09 CL0123