Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0660 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGTCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCCCTGGCTCCAGAGTACCGCCCTAGCTTGGCTGAGTTTCAAGATCCGATCTCATACATTTTCAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCACCAGTGCCACCTTCTTCGAAAAAGACAGCAATTGCGAATCTTCATCGCTCGTTGGCTGCACGAGCTGCTTCTTCTGACTTTTCTAATTCGATATCCCAGCCTACATTCACCACAATGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCCGCGCATCGTCCTGTCTGGCAGAGTGGGGAATACTACACATTTCAGGAATTTGAAGCGAAGGCCAAGGCATTTGAGAAGAACTATCTGAAGAAATGGGCTAAGAAAGGTGGTCTTACGCCTCTGGAGATAGAAACACTTTACTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGACATGCCTGTTTCGGCTTTTGTTCCCGTGAATGGAAAAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGCGTATCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACTTCACCGATGGTGTACTTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGCAGAGGATCACGACCTGCATAGTTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGTGTGCCGCGGGATGCCGCCGTCGCATTTGAGGAAGTGGTCAGAATTCATGGGTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGTGAGAAGACCACAGTGATGTCACCTGAAGTATTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACTTTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGCGGGGAGGCAGCTAACATTGTGACACCTGAATGGTTGAGGGTTGCTAAGGATGCTGCTATTAGGAGGGCGTCAATAAATTATCCACCCATGGTTTCGCATTTCCAGTTACTTTATGATCTTGCACTGGCTTTGTGTTCGAGGATTCCTGGGGGCATCACTGCTGAACCACGGAGTTCTCGGCTCAAAGATAAGAGGAAAAGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTATTACAGAACAATGACTTGCTTCACGGTCTTGGTAAAGGATCTACTATAGTACTTCTTCCTCAGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTGCCAGCAAATGAGGGTGAACCCTGGGTATTCTCCCAGTGCATGCAATTCTGAGGGAGTGAATTCCTCGAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGGAAGAATTTTATTCTGTAAAAGAGAAGCTTGCTTCTTTGTATGAAAGGAACAGGGTCTCCTCATTAAGTGGAAATGCTAACATATGCTCTTCAAGTTCTGTGCCACTTCAAAGAGACTCTGAAAGAGAGACAAGCCAAGGGGATCGGTTGTCAGGCCAGAGACTATTTTCATGTGTCACTTGTGGTATATTAAGCTTTGCATGCGTTGCTATTGTGCAGCCTAGGGAACCAGCGGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAGTGATTGGGTTGCTGGTTCTGGAGTAAGCGTCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCCGAGAAAAACATCTTTGCAGGACAAAAAGAAACATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAAGTTGACCCAGATGATAAATCTAATGTTATGAACCGTCCATCAGGTAGTTTATCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCTATGCAAGTGCAGTCAAGGTTCAAGGTGATTATGGGCAAAAAGCAAACTCAGAAGGTTGTTATACCACTTCAGGGACTGTATTTAAGAATATGAGCTGTACCTTAAATTATACGCAAGATGTTCATGAGGCTGAAACACCAATGCTTTGTAACACTGGATGTCGCATTGATGATGGAAGTGCTTCATTGTTGTCTCATTCTGATGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCCGCTGAAGTGGTGCAACAACTTCATCCAATAGGAGGAGCACACATATCGCTTCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCCAAAAATGTGGCAGAAGAACTGGGTATTGATGTCGTATGGAAGAGTCTTGCTTACAGAAATGCCACCCCAGAAGATGAGGAGAGAATCCAGTCGGCTCTGGATAGTGAGGAAGCAATTCCTGGAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAATCTTAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATGTTATGCATTTGGCCGTAGTACTCCTGCAAGCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGGCCAGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGACGATGAGAAAATCGTACATGGGTGGCTGTTGCCTAACAAGAAAATTGAGAGATCAGAAAGTGTCCACACAGACAGTTTTACTACTAGAAAATATGCTAAGAAAAGGAGAACGACTGTGGAGAGTAGACAAGCCAGGAAAGCCAGTTCCGCTGAGAGAGAATATGTTTCGGATAATTCTATCAAAGAGAAATACAACCCACAGCAAAGGACGTATTCTAGAAGCAAGCAAGCCAAATTTTTTGATAGAGACGACACAGCGTCAGTAGGGGGTCATTCTCCTCTGCAGCGATATCGAAAACCTACAAGAAAGCAAGCCAAATGCATAGAAAGTGATAAAGTTTCAGATGATTCAATGGATGATAATTCTAACATTCGGCAAGGAAGGAATTTCAAAGTCAATGAACCTAAATTTGTTGACAGTGATCTTGCCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAATGAACAGATTGAAGACTCAGAAAGAAATGGAATTTCAGAGGATTCTATGGGTGTTAGCTCTCTTAAGCGGAAGAGGAAGCCTTGTAAAATCAAGCCAGCCAAATATGTTGCCAAAGATGTAATTTCTCATGACCAAATGAAGGATCATTTCCAGAATCAGCAAAGAATTCCTAGAAGCAGACCAGCCAAATACCTTGAGGGGGAAGATATCATGGTATCTGGTGATCAACTGGGGGGCCGAATACATAAGCAGCAAAGATCTAAAGGCAGGCGAGCCAAATGCATCGCTAGAGAGAATATTACATCTGACGACCAACTGGAGGGCCTCTCTGGCAAGTGCTACAGAAGGATTCCTAAAATCAGACAAAGTAAATGCCTGGTTGAGGAAGATGTAGCGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCTGCGTGGTACTATTCCCAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCAGCTGATAACTATTCTCATCTGCTGCGTAGAACTCCTAAGGGGAAGCAAGTTAAAAGCATGGGTGAAGAAGACATAAATTCTGATGATCAAACGGAGGATTCGTCTCGTCAGCAGCGAAGGAGGATTCTTCGAAGCCAGCAATCTAAGTTAGAGACACAGAAAGAAAAGAAACAGTCTAACACTTGTCGTGTGATAGAACAGACTTGCCGGCCTCTAAAGCGAGGTGCTCAGCTGCTAGTGAAATCTAAGACCTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAATCAATCTAAAAACTTCCGAGATTTTAACTTAAATTCAGAAGAGGAGGAAGACGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCAAAAGTTGAGGAGTCTGAAGCAAAACCAAAAGGAAAGGCAACCCATAGGAAGAAGGCAAACAAGGCTATAGCTTTGAAGGTTTCCAAAAAGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGGTGCACTATGAGTTTTGGCTCAAAACAGGAGCTAGCAATGCACAAGAGAAACATCTGTCCTGTAAAGGAATGTGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTCCACGATGATCACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACCGAGCATATTCGAGTGCATACCGGTGCTCGTCCATACATCTGTGCTGAGCGAGGATGTGGACAAACATTCAGATTTGTGTCTGATTTCAGCCGCCACAAGCGAAAGACCGGCCATTCAACAAAGAAGAGTCGTTAA 4563 0.4427 MVGSAALAPESNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLHRSLAARAASSDFSNSISQPTFTTMQQQIGFCPRKQRPAHRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWAKKGGLTPLEIETLYWKATVDKPFSVEYANDMPVSAFVPVNGKKYREAGEGMTLGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYLAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIVTPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGITAEPRSSRLKDKRKSEGETVIKELFVQDVLQNNDLLHGLGKGSTIVLLPQSSSDISVCSKLRVGCQQMRVNPGYSPSACNSEGVNSSKGFVSDDLVFSRTTQVEEFYSVKEKLASLYERNRVSSLSGNANICSSSSVPLQRDSERETSQGDRLSGQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFSDWVAGSGVSVNKFTHAHGDATTSEKNIFAGQKETSALGLLASAYGNSSDSEEDQVDPDDKSNVMNRPSGSLSQNMSSLPSHFQDCYASAVKVQGDYGQKANSEGCYTTSGTVFKNMSCTLNYTQDVHEAETPMLCNTGCRIDDGSASLLSHSDEDSSRLHVFCLEHAAEVVQQLHPIGGAHISLLCHPDYPKVEAEAKNVAEELGIDVVWKSLAYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVICYAFGRSTPASSPTEPKVYQRRASKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKIVHGWLLPNKKIERSESVHTDSFTTRKYAKKRRTTVESRQARKASSAEREYVSDNSIKEKYNPQQRTYSRSKQAKFFDRDDTASVGGHSPLQRYRKPTRKQAKCIESDKVSDDSMDDNSNIRQGRNFKVNEPKFVDSDLASDDTMGYDSDSQLRRELSNEQIEDSERNGISEDSMGVSSLKRKRKPCKIKPAKYVAKDVISHDQMKDHFQNQQRIPRSRPAKYLEGEDIMVSGDQLGGRIHKQQRSKGRRAKCIARENITSDDQLEGLSGKCYRRIPKIRQSKCLVEEDVASDDQLEDHFQKLRGTIPKSRQNKRKNKVMVDSADNYSHLLRRTPKGKQVKSMGEEDINSDDQTEDSSRQQRRRILRSQQSKLETQKEKKQSNTCRVIEQTCRPLKRGAQLLVKSKTSQKMKQPPRVQKNQSKNFRDFNLNSEEEEDGGPSTRLRKRVPKVEESEAKPKGKATHRKKANKAIALKVSKKKDEEAEYECDIDGCTMSFGSKQELAMHKRNICPVKECGKKFFSHKYLVQHRRVHDDHRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYICAERGCGQTFRFVSDFSRHKRKTGHSTKKSR 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0660 1520 SUPERFAMILY Clavaminate synthase-like 210 379 - -
Acco13g0660 1520 SUPERFAMILY beta-beta-alpha zinc fingers 1428 1464 IPR036236 -
Acco13g0660 1520 SUPERFAMILY beta-beta-alpha zinc fingers 1468 1512 IPR036236 -
Acco13g0660 1520 ProSitePatterns Zinc finger C2H2 type domain signature. 1430 1452 IPR013087 -
Acco13g0660 1520 ProSiteProfiles Zinc finger C2H2 type domain profile. 1458 1487 IPR013087 -
Acco13g0660 1520 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Acco13g0660 1520 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 950 975 - -
Acco13g0660 1520 ProSiteProfiles Zinc finger C2H2 type domain profile. 1488 1519 IPR013087 -
Acco13g0660 1520 SMART JmjN_1 24 65 IPR003349 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1257 1303 - -
Acco13g0660 1520 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1347 1379 - -
Acco13g0660 1520 ProSitePatterns Zinc finger C2H2 type domain signature. 1490 1514 IPR013087 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 649 663 - -
Acco13g0660 1520 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Acco13g0660 1520 Gene3D Cupin 18 369 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1323 1346 - -
Acco13g0660 1520 Pfam jmjN domain 26 59 IPR003349 -
Acco13g0660 1520 ProSiteProfiles Zinc finger C2H2 type domain profile. 1428 1457 IPR013087 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 950 1048 - -
Acco13g0660 1520 Gene3D Classic Zinc Finger 1426 1512 - -
Acco13g0660 1520 SMART cupin_9 196 365 IPR003347 -
Acco13g0660 1520 SMART c2h2final6 1405 1427 IPR013087 -
Acco13g0660 1520 SMART c2h2final6 1428 1452 IPR013087 -
Acco13g0660 1520 SMART c2h2final6 1458 1482 IPR013087 -
Acco13g0660 1520 SMART c2h2final6 1488 1514 IPR013087 -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 633 663 - -
Acco13g0660 1520 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1454 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1223 1304 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 976 990 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1018 1038 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1077 1103 - -
Acco13g0660 1520 FunFam Probable lysine-specific demethylase ELF6 1455 1484 - -
Acco13g0660 1520 MobiDBLite consensus disorder prediction 1323 1387 - -
Acco13g0660 1520 ProSitePatterns Zinc finger C2H2 type domain signature. 1460 1482 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0660 Acco-ChrAcco13 4820133 4827182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0660 1358 1519 C2H2 Transcription Factor Family AT3G48430 61.798 8.19e-65 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco13g0660 JmjC 6.6e-35 CL0029