Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0647 ATGGGTGGCAATGGCAGGTCCAGGTGGAAAATCTCTTTCCATCGTAATTCCTCAAGCTCCAAGCTCCAACCAAAAGAGCCTCCCGTCGAGTTTCTGTGCCCAATTTCTGGGTCTCTCATAGCCGAACCCGTGGTTGTTGCTTCCGGTCAGACTTTCGAATCGGTTTCTGTTCAAGTGTGCTGGGACTTAGGTTTCACTCCCAAGCTAGAAGACGGATCCACTCCTGATTTCTCCGCTGCGATTCCAAATTTGGCTCTCAAATCCACGATATCCAATTGGTGCGATAAATCTGGTGTGGAGAAACCTCACCCGCCGGAATATAGCTCCGTGGAGAGGCTCGTCCGTGCAGCAATGGCGTCCCCGCGGCGCGAAAATCAAGAGGCGGAATTGAGGGTTTCGGACAGGGAATTGCTCAACGCCGTGCTGGATAATCCACCCGTCACTTTCTCTCACGCAGCCACGGAGTTGGGTCCCCGGATCAACCCGTTCCAAACAAGTTCATCCGACTCCGTGGGCTGTCCTGAGACTCCTTTACCTCTCGCGACTCGTCCCACCTGTTACTCGTCTTCGTCTTCTTCTGTCGAAATCAACCAGAATGAACCCCGGAGCCCTATTGGTCCAATTTCCGAGGAAGAGGAGAAATTAGTGTTGAAGTTGAGGAGCGACGAAGCTTCTGAGCAGGAAGAAGCGGTTGTTTCGCTAAGGAACATCACCAAGACAAGAGAGGACACCAGAATTTCTCTTTGCACGCTTGCGTTGCTCTCATCACTCCGATCACTGATCCCATCGGATCATCCCGACGTGCAAGTAAACGCCGTCGCCTCACTGGTTAATTTCTCCCTCGAAAAATCTAACAAAGTGAAAATCGTGAGGTCTGGATTTATCCCTCCCCTTATTGTAGTCTTGAAAAGCGGATTCCCCGAGGCGCAGGAACACGCAGCGGGATCACTATTCAGCTTGGCCTTAGACGACGAGAACAAAATGGCCATTGGCGTTTTGGGCGCGCTGGAGCCACTCATGAACGCCTTGAGGTCCGAGTCGGAACGGACTCGGCACGACTCGGCGCTGGCGTTGTACCACCTGACCTTGGTCCACAGCAACAGGGTGAAGCTGGTGAAGCTCGGGGTGGTGCCGACGCTGCTATCAATGGTGAAATCAGGGGATTTGGCGAGCCGTGTTTTGCTGGTTCTGTGTAATATTGCGGCGGGGACGGAGGGGCGAACGGCGATGCTGGATGCGAATGCGGTGGAGTGCTTGGTGGGTTTACTGAGGGAGAATAAAATGGCGGCGGAGGCGACGACAGAACCCTGTGTGTCGGCGTTGTACGGAATGAGCCATGGAAGCTTGAGGTTCAAAGCGTTGGCAAAGGAAGCAAGGGCTGTGGAAGTGTTGAGAGAGGTTGAAGAGAGAGGATCAGGGAGGGCGCGAGAGAAGGCCAAGAGGATGTTGCAGATGATGAGAGCCGGAGGAGAAGAGGATGACGAAAACGGCGGCGGTTCTGATGAGGCATTGGACTCGGGTGGATTGGGTCGAACCCGGTTCAGAGTTGGTGGCGGGAGGACCATGAACGCGGCTAACACCACCACGTTTTAG 1593 0.5411 MGGNGRSRWKISFHRNSSSSKLQPKEPPVEFLCPISGSLIAEPVVVASGQTFESVSVQVCWDLGFTPKLEDGSTPDFSAAIPNLALKSTISNWCDKSGVEKPHPPEYSSVERLVRAAMASPRRENQEAELRVSDRELLNAVLDNPPVTFSHAATELGPRINPFQTSSSDSVGCPETPLPLATRPTCYSSSSSSVEINQNEPRSPIGPISEEEEKLVLKLRSDEASEQEEAVVSLRNITKTREDTRISLCTLALLSSLRSLIPSDHPDVQVNAVASLVNFSLEKSNKVKIVRSGFIPPLIVVLKSGFPEAQEHAAGSLFSLALDDENKMAIGVLGALEPLMNALRSESERTRHDSALALYHLTLVHSNRVKLVKLGVVPTLLSMVKSGDLASRVLLVLCNIAAGTEGRTAMLDANAVECLVGLLRENKMAAEATTEPCVSALYGMSHGSLRFKALAKEARAVEVLREVEERGSGRAREKAKRMLQMMRAGGEEDDENGGGSDEALDSGGLGRTRFRVGGGRTMNAANTTTF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0647 530 FunFam RING-type E3 ubiquitin transferase 9 101 - -
Acco13g0647 530 FunFam RING-type E3 ubiquitin transferase 210 486 - -
Acco13g0647 530 SUPERFAMILY RING/U-box 16 104 - -
Acco13g0647 530 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Acco13g0647 530 Pfam Armadillo/beta-catenin-like repeat 323 362 IPR000225 GO:0005515
Acco13g0647 530 PANTHER U BOX DOMAIN-CONTAINING 22 487 - -
Acco13g0647 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 100 IPR013083 -
Acco13g0647 530 SMART arm_5 403 446 IPR000225 GO:0005515
Acco13g0647 530 SMART arm_5 241 281 IPR000225 GO:0005515
Acco13g0647 530 SMART arm_5 323 363 IPR000225 GO:0005515
Acco13g0647 530 SMART arm_5 364 402 IPR000225 GO:0005515
Acco13g0647 530 SMART arm_5 282 322 IPR000225 GO:0005515
Acco13g0647 530 MobiDBLite consensus disorder prediction 488 530 - -
Acco13g0647 530 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Acco13g0647 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 330 IPR000225 GO:0005515
Acco13g0647 530 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Acco13g0647 530 SUPERFAMILY ARM repeat 213 487 IPR016024 -
Acco13g0647 530 Gene3D - 209 485 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0647 Acco-ChrAcco13 4730207 4731799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0647 1 530 U-box Gene Family AT5G65200 54.189 0.0 528
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0647 13 4730207 4731799 Acco13g0647 13 4730207 4731799 ECH