Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco13g0643 | ATGGCAACATTTGCAGGTACCACCCAGAAATGTGAGGCCTGTGAGAAGACAGTTTATTTGGTTGATCAGCTTACTGCTGACAACAAAATTTACCACAGATTTTGCTTCAGATGTCACCACTGCAAGGGAACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTTTTATACTGCAAGCCTCATTATGATCAACTCTTGAAGAAGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGAGTTGTCAGGTCTACTGATCAGGTACAAAGCAATGGCAAGGTTTCTAGATTATTTATAGGAACTCAGGAGAAGTGTGTTGCTTGCAAGAAGACAGTCTACCCAATTGAAAAGGTGGCCGTTGACGGAAAATCTTACCACAAGATTTGTTTCAGATGCTCCCATGGAGGCTGTGTCATCAGCCCCTCAAACTATGTGGCCCATGAACACCGTCTCTACTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAATGAAACTAAACATGAAAATGATGAAAAAAAGCATGAAAACGAAATGAAACATGAAAATGAAAATGGAAATAGAATTGTTCAGGAGGTCACTGAGAACACAACAACTGAGTAG | 651 | 0.4101 | MATFAGTTQKCEACEKTVYLVDQLTADNKIYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLEKSFEGIPRTARVVRSTDQVQSNGKVSRLFIGTQEKCVACKKTVYPIEKVAVDGKSYHKICFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDRHENETKHENDEKKHENEMKHENENGNRIVQEVTENTTTE | 216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco13g0643 | 216 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
| Acco13g0643 | 216 | PANTHER | OS06G0237300 PROTEIN | 4 | 94 | - | - | |
| Acco13g0643 | 216 | MobiDBLite | consensus disorder prediction | 170 | 216 | - | - | |
| Acco13g0643 | 216 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Acco13g0643 | 216 | MobiDBLite | consensus disorder prediction | 172 | 204 | - | - | |
| Acco13g0643 | 216 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
| Acco13g0643 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Acco13g0643 | 216 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Acco13g0643 | 216 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Acco13g0643 | 216 | Pfam | LIM domain | 11 | 64 | IPR001781 | - | |
| Acco13g0643 | 216 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
| Acco13g0643 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 174 | - | - | |
| Acco13g0643 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Acco13g0643 | 216 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Acco13g0643 | 216 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Acco13g0643 | 216 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Acco13g0643 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Acco13g0643 | 216 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Acco13g0643 | 216 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
| Acco13g0643 | 216 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
| Acco13g0643 | 216 | Coils | Coil | 181 | 201 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco13g0643 | Acco-ChrAcco13 | 4705997 | 4708066 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Acco13g0643 | LIM | 2.2e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Acco04g2625 | 04 | 43128138 | 43130768 | Acco13g0643 | 13 | 4705997 | 4708066 | CCT | |
| Acco13g0643 | 13 | 4705997 | 4708066 | Acco13g0643 | 13 | 4705997 | 4708066 | ECH |