Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0633 ATGCTCTGTATTACTTCTCTTTTTTCATGTTACCGTAGTAGTACTCTGTACAAAACCGGTGCCAAATATCAAACTTATCTGGGTTTTTCACACCAAGTTGGAAAAGCTTCAATTTTAGTCAATCAATGCATGTCTCAATCAAAACCACAAAACAATATCTATCTCTCGCATGATATTCTAAAGAGTTTCATTTTCTCTCTTCACGCAATCTCATTCCCTTCAATGATTAATGTATCCAATCAATCCGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAGGCGTATCTCCGGCGACCCTTCTCGCTTCCCTGATCTCTCTTTCTCAGGCTATATGCAGTTTTCAATCCAAGTTCTTCCCAACCCAACGTCGAAACTCGAGAGAAATAATTCGCCAACTCGGTGTCACTCTCCTCTTCCTCGAGGAAATTCGAGACCGCGGTGTTCCGATAAGCGACTCTGTTTCTCTCTGCTTCTCCGAACTTCACCTCTGTCTCCAGAAAATTCACTTCTTACTCTCAGATTGTACTCGTGAAGGTGCTCGGCTATGGATGCTAATGAAATCGGAACACGTCGCCACTCAATTCAGGGTTCTGACTCGCGCGTTGGCCACTGCTCTTGACGTTTTGCCTCTGAGCAGCATCGAGATTTGTGACGAAGTGAAAGAGGTAGTTGAATTAGTGGCCAAGCAAGCTCAAAAGGTAAAGCTTGAATTAGACCCACACGATGAACTCGCCACCAAGCAAGTCCTTTCAGTTTTGTATCAGTTTGAGAGAGGAATTGAACCCAACTTGAGTATCATGAAGCGGGCATTGAACTACTTGGGAATCAAAAATTGGAATGATTGCAGCAGAGAGGTTAAATTCTTGGAAGATGAAGTCAACTTTAATTGCTCTGAAGGTGACGTTAGGGAAGTTCCATTTCTGAGTAGTTTAGTTGGGTATTTATGTTATTGCAGGGTAGTGATATTTGAAACTCTGGATTTTCAACAAACCGCCGCCACGGACCCGTCGGAGACAAGGTGTAGCACGGAGATGATTAAATTCATAAACCCACATGACTTCCGATGTCCGATTACTTTACAACTAATGACCGATCCTGTGACTGTATCGACGGGTCAGACGTATGATCGATCATCCATTGAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACAGGGGAGAAGCTAACAAACACAGAGCTCGTCCCAAACACAACCCTCAGAAAGCTAATCCAACAATTCTGTGCTGAAAAAGGAGTTTCCTCCTTGGCCACCAAGTTTGGTCACCGGAGTCGCGACATAACGAGAACCATCGTCCCAGGAGGTACAGCTTCAGCACATGCCATGCAATTTCTCTCATGGTTCACTGCCAGGAGGCTTGTGTTCGGAACAGAGGAGCAGAAAAACAAAGCAGCTTACGAAATCCGTGTGCTTGCAAGATCCAACATTTTCAACAGAGCATGTTTGATTGAAGTTGGAACAGTTCCTTTGTTGCTCAATCTCTTGGACACGAACGATAAATCAATGCAAGAGAACGCAATCTCTGCTCTTCTGAAACTGGCAAAGCATAATAATGGACAAACAACTATAATGGAAAGTGAAGGATTAAAACCAATCCTTACGGTTCTCAAGAATGGAATTTCTTTAGAAGCTCGTCAAACCGCAGCTGCGATATTATTCTACCTTTCTTCCACGAGAGAGAACAGGAAAGTAATCGGAGAAAACCCAGAAGCAATCCCTGCTTTGGTAGAACTAATCAAGGAAGAAACAGCGGCATTTGGGAAAAAGAACGCAATAGTCGCCATTTTCGGGCTTCTCTTGCTTCCTCAGAATCATCAGAAAGTGATTGAAGCTAATACAGTTCCGGCGCTGGTTAGTATCTTAGCTTCGTCGTCGTCGTCAAAATCCGACCTGACCACAGATTGTTTAGCGGTTCTTGCGGCGTTGGCGGAGAACGAGGAGGGAGCAAAAGCTGTGTCAAAAGCTTGTGGTTTGTCATTGATCGTTGGGTTGTTACAGACGGTGACATGGAGCACAGGGAAAGAACACTGTGTGGCAATTTTGATGTCGCTGTGTGTTCATGTCGGAGAAGAAGTGGTGGCTGTTCTAGCGAAAGATCCGACGTTGATGCCGTGGCTTTACTCACTGCTCACCGACGGAACTTCTCATGCGGCTAAGAAGGCTCGTTCTCTCATCAAACTTCTTCATGAATTCAATGACACTAGAACTTCTCAGTGGGTTACTTCTTCGGTCGGGCCACAACGATCCCTTCACATTTGGTGA 2298 0.45 MLCITSLFSCYRSSTLYKTGAKYQTYLGFSHQVGKASILVNQCMSQSKPQNNIYLSHDILKSFIFSLHAISFPSMINVSNQSGRRILSFPAVHPCEGVSPATLLASLISLSQAICSFQSKFFPTQRRNSREIIRQLGVTLLFLEEIRDRGVPISDSVSLCFSELHLCLQKIHFLLSDCTREGARLWMLMKSEHVATQFRVLTRALATALDVLPLSSIEICDEVKEVVELVAKQAQKVKLELDPHDELATKQVLSVLYQFERGIEPNLSIMKRALNYLGIKNWNDCSREVKFLEDEVNFNCSEGDVREVPFLSSLVGYLCYCRVVIFETLDFQQTAATDPSETRCSTEMIKFINPHDFRCPITLQLMTDPVTVSTGQTYDRSSIEKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLIQQFCAEKGVSSLATKFGHRSRDITRTIVPGGTASAHAMQFLSWFTARRLVFGTEEQKNKAAYEIRVLARSNIFNRACLIEVGTVPLLLNLLDTNDKSMQENAISALLKLAKHNNGQTTIMESEGLKPILTVLKNGISLEARQTAAAILFYLSSTRENRKVIGENPEAIPALVELIKEETAAFGKKNAIVAIFGLLLLPQNHQKVIEANTVPALVSILASSSSSKSDLTTDCLAVLAALAENEEGAKAVSKACGLSLIVGLLQTVTWSTGKEHCVAILMSLCVHVGEEVVAVLAKDPTLMPWLYSLLTDGTSHAAKKARSLIKLLHEFNDTRTSQWVTSSVGPQRSLHIW 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0633 765 Pfam U-box domain 354 423 IPR003613 GO:0004842|GO:0016567
Acco13g0633 765 SUPERFAMILY ARM repeat 469 741 IPR016024 -
Acco13g0633 765 Gene3D - 461 602 IPR011989 -
Acco13g0633 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 427 IPR013083 -
Acco13g0633 765 SUPERFAMILY RING/U-box 354 425 - -
Acco13g0633 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515
Acco13g0633 765 Pfam Armadillo/beta-catenin-like repeat 490 526 IPR000225 GO:0005515
Acco13g0633 765 Gene3D - 603 752 IPR011989 -
Acco13g0633 765 PANTHER U BOX DOMAIN-CONTAINING 152 740 - -
Acco13g0633 765 FunFam RING-type E3 ubiquitin transferase 435 751 - -
Acco13g0633 765 CDD RING-Ubox_PUB 354 406 IPR045210 -
Acco13g0633 765 SMART arm_5 613 656 IPR000225 GO:0005515
Acco13g0633 765 SMART arm_5 486 527 IPR000225 GO:0005515
Acco13g0633 765 SMART arm_5 529 569 IPR000225 GO:0005515
Acco13g0633 765 FunFam RING-type E3 ubiquitin transferase 353 425 - -
Acco13g0633 765 SMART Ubox_2 356 419 IPR003613 GO:0004842|GO:0016567
Acco13g0633 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 669 IPR000225 GO:0005515
Acco13g0633 765 ProSiteProfiles U-box domain profile. 352 426 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0633 Acco-ChrAcco13 4628684 4632066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0633 75 765 U-box Gene Family AT1G60190 38.614 2.23e-168 499