Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0625 ATGGCTATCAGAGGCGTCGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTCGCTACCAGTGTAATTATTGTCGAAATTAATTGGAAGCGGTATCATACCTGTACACACCCTTTACATATATGGATTGTGGTCGACTACTCTACTGTGTTTATCTTTCGGTTGCTGATGTTTGTTGATAATGGACTTTCTGCGGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGGTTCTGTGGAAGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATCGGTACCCTCTGGTTCACTAGTGCAAGGAACTGCTTGCCCGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTGCTTTGTGTTGCTTGCATGTCATTAGGCAAGTGGTTGACCCGAAGACAAGCACATTTATTGCGTGCCCAGCAGGGTATTCCCGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACTAGAGGTATGGGCCAAGATGCTGGGGCATATCATCCTGGACTTTATCTAACCCCAGCTCAGAGAGAAGCTGTAGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCTACTGACTGCAGTGAATGCCCTATCTGCTTAGAAGAATTCCATGAGGGAAACGAGGTCCGTGGCTTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTTCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTGACAACAACAAGATATGTGAGAGGTCAACCTTCAAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGCCCAGTGCGTTCAGAAATTGCTGGGCCAGTTGATGAGGTGGGTAATGCTTTGGAAAATGCAGAGAATGGTAGTGTGCCTGAAGAGGTACGAAATAGATCAATTAGAGAGCGAGGCCCTTCAGTCGAATGCATGCCTGTCAGTCTCTCCTCTGCTCAAAACTAG 1143 0.4619 MAIRGVDFKWYDGFFLSMLATSVIIVEINWKRYHTCTHPLHIWIVVDYSTVFIFRLLMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPVDEVGNALENAENGSVPEEVRNRSIRERGPSVECMPVSLSSAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0625 380 SUPERFAMILY RING/U-box 217 284 - -
Acco13g0625 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Acco13g0625 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Acco13g0625 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Acco13g0625 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Acco13g0625 380 SMART ring_2 235 275 IPR001841 -
Acco13g0625 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0625 Acco-ChrAcco13 4594795 4598322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0625 58 364 C3H Transcription Factor Family AT3G47990 72.581 1.02e-160 451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0625 13 4594795 4598322 Acco13g0625 13 4594795 4598322 ECH