Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0603 ATGCATTCTCATCCTCTCCTATTAAGGAAGATGGCTCTTGAAACGCTGAAGCTGTCTCTTACCCTCAATAACATTTCTGTTACTGTTTCTGTTTCTGTTTCTACCATGGATCTTCACACAAATCTCAGAGATAACTCTTACACCTCACAGCCAATAATGCATAATCTTCAAGAAACTTACCTGAGGCCTAATATGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCATCACAGGGTTTCTTGCAAGATTTTAATTACCACCTGGATGATGATGATCATCACAGTCAGTTTCACCTTGATGGTTCTTCTTCATCAAACCCAGTTGCTGCTTTTGGGATGATCCATACTTTGAGTTTTGATTCTTTTGATAACTTTGATGTTTATGAGTGCAAACCGTTTGTTGCTGATGAGATCAATAATAATGTGCAACATGCTCAGGTTTTGGATAATTTCCAATATGAAGCTACAAACTATTGCACCTTGAACGTGTCGGGTCAGAGAAATCACCAAGTCAACATGAACCATCAAACCTATGTGCCTTTCAATAAAAATTCTCAGGAAATTATCAAGCCTGTGAACTTTGTTGTGCCAGATGAACTCTCCTGCATATCTCCTTCTGTGAATTATTACAGAAAAGTAGGCTTCAATAAGAGAAGCAATAGGCTATCTTCCACTAGAGGGACTAGTAGTTACAGACTTCGCAAGAAATCCAACGCTGTAAAGGGCCAATGGACCATAGAAGAAGATAGGTTGTTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAATGCAGGGAGAGATGGCATAATCATCTAAGACCTGACATAAAGAAGGAGACATGGACAGAAGAAGAAGACAAGGTACTGATAGAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCAAAGAGGTTGCCAGGAAGAACAGAAAACTCCATTAAGAACCATTGGAATGCCACAAAGAGAAGGCAATACTCTAAGAGAAATTGTCGCTCTAAGAACCCTAAACCCTCTCTTTTACAAGATTATATCAAAAGCTTGAACTTAGACCAAAACCCACCATTAGACTATCGCAAAAAATCTTCTTCTTCTAATAATAACAACACTGCCACAATCACGAACAAATCTGAAGCATCGCACTCTCATTATCAGTTAACAGATGATAGAATATTTGTGCCGAATAATTATGGGTTTAAGGAGGCCCAAGATTTTTGCTTTGACGAGAGCTTGCTTCGAGAAGAAGAAGAAGATGATGATCTGGTTGAAGACAAGTTTGAAGAGAAAATGGCAACAATGTTGGAGTTTGAAGAGAAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAATGACGCTATTATTGATATGTAA 1434 0.3884 MHSHPLLLRKMALETLKLSLTLNNISVTVSVSVSTMDLHTNLRDNSYTSQPIMHNLQETYLRPNMKLDESPFGVPNSSSQGFLQDFNYHLDDDDHHSQFHLDGSSSSNPVAAFGMIHTLSFDSFDNFDVYECKPFVADEINNNVQHAQVLDNFQYEATNYCTLNVSGQRNHQVNMNHQTYVPFNKNSQEIIKPVNFVVPDELSCISPSVNYYRKVGFNKRSNRLSSTRGTSSYRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKVLIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRNCRSKNPKPSLLQDYIKSLNLDQNPPLDYRKKSSSSNNNNTATITNKSEASHSHYQLTDDRIFVPNNYGFKEAQDFCFDESLLREEEEDDDLVEDKFEEKMATMLEFEEKKKELDLVEMMSQVNDAIIDM 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0603 477 PANTHER MYB PROTEIN-RELATED 218 395 - -
Acco13g0603 477 SMART sant 242 291 IPR001005 -
Acco13g0603 477 SMART sant 294 342 IPR001005 -
Acco13g0603 477 CDD SANT 246 289 IPR001005 -
Acco13g0603 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 293 IPR017930 -
Acco13g0603 477 MobiDBLite consensus disorder prediction 369 398 - -
Acco13g0603 477 FunFam Transcription factor MYB119 296 360 - -
Acco13g0603 477 SUPERFAMILY Homeodomain-like 241 336 IPR009057 -
Acco13g0603 477 MobiDBLite consensus disorder prediction 331 356 - -
Acco13g0603 477 CDD SANT 297 340 IPR001005 -
Acco13g0603 477 MobiDBLite consensus disorder prediction 374 398 - -
Acco13g0603 477 Gene3D - 242 294 - -
Acco13g0603 477 Pfam Myb-like DNA-binding domain 246 304 - -
Acco13g0603 477 ProSiteProfiles Myb-like domain profile. 290 340 IPR001005 -
Acco13g0603 477 FunFam Transcriptional activator Myb isoform A 242 295 - -
Acco13g0603 477 ProSiteProfiles Myb-like domain profile. 238 289 IPR001005 -
Acco13g0603 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 294 344 IPR017930 -
Acco13g0603 477 Gene3D - 296 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0603 Acco-ChrAcco13 4373094 4375066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0603 128 442 MYB Transcription Factor Family AT4G18770 53.049 6.99e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco13g0603 Myb_DNA-bind_6 3.7e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0603 13 4373094 4375066 Acco13g0603 13 4373094 4375066 ECH