Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0584 ATGAGGTCGAGAGTCGGCATGGATATCAACAAAGGAGGACAAGTTGAGAAGGTGAACGGAAAAGAATTGACTTATTGCGAATTTGTGAACCGTTACATGGAGAAGAACTGTCCTGTGGTGCTCACAGGACTCATGGACGATTGGAGGGCTTGCAAGGACTGGGTCGCCGTTAATGGCCAACCCAACCTTCAGTTTTTTTCTTCTCATTTTGGGAGTTCTAAAGTTCAGGTTGCAGATTGTGGCACTAGAGAATTCACGGATCAGAAAAGGGAGGAGATGCGTGTTTCAGATTTTATAAGCCGTTGGCTGGAGGGTTCTCCAGTACAGCCTGATACTGAAAATCATGATAGTAATGGTCATGGCTCCGTACTGTATTTGAAGGACTGGCACTTTGTAAAGGAGTATCCAGAATATTTAGCATACATCACTCCAGTTTTCTTCCGTGACGACTGGCTCAACTTCTATCTTGACTACTACAAAATGCATACAGATCCTGATAGTTACCAACAAAATAGTGAAATATGTTGTTCTGATTATCGTTTCGTTTACATGGGGGCAAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGTTGGTCGGCGAATGTCTGTGGGAAGAAGAGATGGTTTTTTCTAGCTCCTCAGCAGAGTCATCTTGTATTTGACAGGAATGTGAAAAGTTGTGTGTATGATATCTTTGCTGAAGTAAATGAATCAAAATTTCCGGGCTTTAAAAAGACTATCTGGTTAGAATGCACGCAAGAAGCGGGTGAAATTATTTTTGTTCCAAGTGGATGGTATCATCAAGTTCATAATCTGGAGGATGCTATATCTATAAACCACAACTGGTTCAATGGCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAGGAATACATAGAGGACATCAAGGATATATGTGATGACTTTGAGGGTCTCTGCCAGCGCAATCTTTTTGCTAACACAGGAATGAACTTTTATGACTTCTTTTCTTTCATAACGTGCTTCACCCTGGCTAATTTAGCGTTGTTTTGCTATCTAAGTGGAAAATATGGAAGCCCCTCTAAAAGCTCACTTACAATCACTCAACATTTAATTTTCAATCTTGGATCGGTGAGGAAGGTTGCAATGGAGATGAAAAGCATGCATGCCCTTGAAGGAAATCATTACTGCTTCCTGGACATCATAAAAACATCTGAAGATCCTAGGTTCTCTAGGTTGTGCACGCATTTAATGAAAACATATGTGACGATACACGAGCAACCTTATTTGTCTTCTGAATTTGAGAAATCTGCAGTTGATTATCTGATGGGCCTCAATGTATTGAAAGCATGTTCTTCTCGGATCCACACACCTGAAGACCTAACCAAACTTATAGACAATGCTGTTTCAAAACTTGGTGACAATTACACTCAGCAACTGTCTGCAGTACATATTTACAATGTCTCCCACGCCAAAGGACTGGATTCTGGAAGGAAGTTCACTGGGACCTCTTTGACGTTTACCTTTCACAATATAGAAGACCTTGGTGACTGGTGGTCCCCACCTTTTGTGATTTTCTCCATTTAG 1602 0.4107 MRSRVGMDINKGGQVEKVNGKELTYCEFVNRYMEKNCPVVLTGLMDDWRACKDWVAVNGQPNLQFFSSHFGSSKVQVADCGTREFTDQKREEMRVSDFISRWLEGSPVQPDTENHDSNGHGSVLYLKDWHFVKEYPEYLAYITPVFFRDDWLNFYLDYYKMHTDPDSYQQNSEICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKRWFFLAPQQSHLVFDRNVKSCVYDIFAEVNESKFPGFKKTIWLECTQEAGEIIFVPSGWYHQVHNLEDAISINHNWFNGYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLFANTGMNFYDFFSFITCFTLANLALFCYLSGKYGSPSKSSLTITQHLIFNLGSVRKVAMEMKSMHALEGNHYCFLDIIKTSEDPRFSRLCTHLMKTYVTIHEQPYLSSEFEKSAVDYLMGLNVLKACSSRIHTPEDLTKLIDNAVSKLGDNYTQQLSAVHIYNVSHAKGLDSGRKFTGTSLTFTFHNIEDLGDWWSPPFVIFSI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0584 533 Gene3D Cupin 4 288 - -
Acco13g0584 533 SUPERFAMILY Clavaminate synthase-like 13 316 - -
Acco13g0584 533 SMART cupin_9 124 304 IPR003347 -
Acco13g0584 533 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 336 - -
Acco13g0584 533 ProSiteProfiles JmjC domain profile. 132 304 IPR003347 -
Acco13g0584 533 Pfam Cupin-like domain 27 287 IPR041667 -
Acco13g0584 533 FunFam JmjC domain-containing protein 4 9 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0584 Acco-ChrAcco13 4240156 4244533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0584 13 296 Glycosyltransferase AT1G78280 25.685 2.45e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco13g0584 Cupin_8 1.3e-24 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0584 13 4240156 4244533 Acco13g0584 13 4240156 4244533 ECH